Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq3 98.7 8e-16 >seq11 Length=1045168 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||| || |||||||| || | || || || | Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || |||||||| | || |||||| Sbjct 486469 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 486528 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | ||||| || Sbjct 486529 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 486588 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || || | || |||||| | |||| || Sbjct 486589 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 486635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||| || |||||||| || | || || || | Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || || ||||| || | || || ||| Sbjct 486697 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 486756 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | || || ||| Sbjct 486757 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 486816 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || || | || |||||| | |||| || Sbjct 486817 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 486863 >seq3 Length=1889938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| |||||||| ||||| || || | || || || Sbjct 1688394 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1688335 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | || ||| || ||| || |||||||| | || ||| Sbjct 1688334 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 1688275 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | |||| ||| || |||||| | || |||| ||||||| | | || || Sbjct 1688274 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 1688215 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || || || || |||| Sbjct 1688214 AATATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840608793121