Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11 165 6e-36 seq3 152 4e-32 >seq11 Length=1045168 Score = 165 bits (182), Expect = 6e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||| |||||||| | Sbjct 486635 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 486576 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| |||||| | || |||||||| ||||| || || Sbjct 486575 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 486516 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| |||||| | ||| ||| |||| | ||| || || ||||||| Sbjct 486515 ATTCCTTCTTTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 486457 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 486456 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 161 bits (178), Expect = 8e-35 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || |||||||||||||||||||| || | | || | | ||| || | |||||| ||| Sbjct 486833 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 486774 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| || || || ||||| |||||||| ||||| | ||| ||| Sbjct 486773 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTA 486714 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||| | ||| || || ||||||| ||||||||||| ||||| |||||||| ||| Sbjct 486713 ACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTT 486654 Query 29770 TTAACAAATATCTGCAT 29786 || ||||| |||||||| Sbjct 486653 TTTACAAAAATCTGCAT 486637 Score = 140 bits (154), Expect = 2e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||| |||||||| | Sbjct 486407 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 486348 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| |||||| | || |||||||| ||||| || ||| Sbjct 486347 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 486288 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| |||||| | ||| ||| |||| | ||| ||||| | ||||| Sbjct 486287 ATTCCTTCTTTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTAC 486229 Query 29739 TTCAAGAGTTATAGTTTTGCC 29759 ||||||||||||||||| || Sbjct 486228 ATCAAGAGTTATAGTTTTTCC 486208 >seq3 Length=1889938 Score = 152 bits (168), Expect = 4e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||||||||| ||||| || | | || | ||| || Sbjct 1688183 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 1688242 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||||| |||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 1688243 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG- 1688301 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||| ||| |||| | ||||||||| |||| || |||||||| || ||||| Sbjct 1688302 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1688361 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| ||||| ||||| || |||||||| Sbjct 1688362 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1688394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218275112777