Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 seq12 107 2e-18 seq2 107 2e-18 seq11 91.5 2e-13 seq13 84.2 3e-11 >seq8 Length=746845 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| | ||||| |||||||| | || ||| | || || Sbjct 498834 GATACATTAGCTCATTTATTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTACA 498893 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| | || | |||| ||| ||| || ||||| ||||| || || Sbjct 498894 G-AATATTTAC--ATTTTAAAGATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATG 498950 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| || |||||||||||||| ||| | ||| | ||| || |||||||||| || Sbjct 498951 TGTTATACAGGATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGA 499010 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193152 ||||||||| | | | || |||| ||||||||| |||||||| Sbjct 499011 GGATTATTTAGAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 499056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 500054 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 500113 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 |||||||||||| |||| | |||| ||||| | ||||||| || | | Sbjct 500114 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 500172 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||| | |||||||| |||||||| ||| ||||| || |||||| Sbjct 500173 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 500232 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 500233 CTGCTAAAATGTTAAAAGAA 500252 >seq12 Length=931358 Score = 107 bits (118), Expect = 2e-18 Identities = 394/607 (65%), Gaps = 25/607 (4%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || ||||| | |||||| |||||| ||| ||| || ||| ||| || Sbjct 696405 ATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAA 696464 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATT-TATGTGGTTT 168637 | | ||| | | | ||| | | |||||| | | |||||||||||| || || Sbjct 696465 AAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAAAATTA 696524 Query 168638 TACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 168697 | | | ||| ||| |||| | ||||| ||||||||||| |||||||||||| || Sbjct 696525 TTTC-ATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGG 696583 Query 168698 AGCTCAATATATTGA-CTG--TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAG 168754 ||| |||||| || || ||||| |||| | | |||| || || ||| ||| Sbjct 696584 TGCTGAATATACAGATATGCATGATA---ATTATAAAGATAAAGGTGTTGATCAACTAAA 696640 Query 168755 TCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT-- 168812 | | ||||||| | | || |||| | |||| || |||| || || || Sbjct 696641 AAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGA--ATTATTTTAT-GTGC 696697 Query 168813 -TGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATT 168871 ||| ||||| | | | |||||||||| | || || ||||| | |||| ||||| Sbjct 696698 ATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATT 696757 Query 168872 TTATG----TAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATT 168927 ||||| | | | |||| | ||| | ||| ||||||||||||| ||||| Sbjct 696758 TTATGTTTTTGATGGAAAATT--ATCATGTATT-----ATGTATCAAAGATCTTGTGATT 696810 Query 168928 TAGGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTA 168987 ||||| ||||||| || | ||| |||| | |||||| | || ||| | || || Sbjct 696811 TAGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC 696870 Query 168988 AATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATT 169047 || ||||| || || | | ||||| ||| || || ||| ||| || ||| Sbjct 696871 AAGTATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTATA 696930 Query 169048 CAAACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATG 169107 || ||| ||||| ||||| |||| || || |||| || ||| |||| || | | Sbjct 696931 ATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTATCCTTTCCCTACTC 696990 Query 169108 TTAAATT 169114 ||||||| Sbjct 696991 TTAAATT 696997 >seq2 Length=1760775 Score = 107 bits (118), Expect = 2e-18 Identities = 253/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 163000 TAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACA 163059 ||||||||||||| | ||| ||| |||| ||||| | | ||| | || || ||| Sbjct 534514 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 534573 Query 163060 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 534574 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 534633 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 || | ||||| ||| |||||||||| ||| |||||| ||||||||| | | || Sbjct 534634 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 534693 Query 163180 ATCAAGATATATTTATACCAAAC-CAAATAAAATATTAAAATATATATTTAGAGAAGAAG 163238 | | || ||||| | ||| |||| || | | || || |||||||| ||| | | Sbjct 534694 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 534752 Query 163239 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTCATTTTA 163286 |||| || |||||||| ||| | || || || ||||| ||| || Sbjct 534753 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 534812 Query 163287 TCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 163346 | ||||| |||||| ||| || | ||||| | | || || ||||| |||| |||| Sbjct 534813 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 534872 Query 163347 GTTTTATCCCTCAATATAAT 163366 ||||| || | |||||| Sbjct 534873 CATTTATTCCAAATTATAAT 534892 >seq11 Length=1045168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 || ||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 272352 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 272293 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | || | || | | || ||| |||||||||| | ||||| || | Sbjct 272292 GCTAGATCTCGAGGGCCTAGACAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 272234 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 272233 AGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 272195 >seq13 Length=1563612 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| ||| |||| ||| || || |||| ||| | |||||| || | |||||| Sbjct 423807 AAAGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAA 423748 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975 ||| | ||||| |||||| || |||||| | ||||| | Sbjct 423747 TGAGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAG 423688 Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035 || | ||| | |||||||||| ||||||||||| ||||||||||| |||||| | ||| Sbjct 423687 CTGTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTC 423628 Query 52036 AATCATATGGAGCTACTGCTGAATTACAAGAATTAA 52071 ||||| ||| | | | ||||| || || | |||| Sbjct 423627 AATCACATGAAACCAGATCTGAAATAAAACATTTAA 423592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176035875160