Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq12 136 5e-27 seq2 122 1e-22 seq8 91.5 2e-13 seq11 89.7 7e-13 seq5 87.8 2e-12 >seq12 Length=931358 Score = 136 bits (150), Expect = 5e-27 Identities = 428/647 (66%), Gaps = 26/647 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| |||||| | || ||| | ||| | | |||||||||||| || || | Sbjct 696346 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTGCGAG 696402 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473 |||| || |||||||||||||| | || | ||| ||||||| ||| |||||| Sbjct 696403 GTATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAG 696462 Query 180474 ATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTG 180533 | | | || | | | | ||| | | |||||| | | | ||||||||| | | Sbjct 696463 AAAAAAATG---TAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAA 696519 Query 180534 GATTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 180591 ||| |||| | || ||| |||| | || || ||||||||||| ||||||||||| Sbjct 696520 AATT--ATTTCATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACA 696577 Query 180592 TGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAAT 180650 | || ||| |||||| || | || || || |||| | ||||| | || ||| Sbjct 696578 TTTTGGTGCTGAATATACAGA-TATGCATGATAATTATAAAGATAAAGGTGTTGATCAAC 696636 Query 180651 TAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATA 180710 ||| | ||||| | || |||||| |||| ||| || |||| || || | Sbjct 696637 TAAAAAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTG 696696 Query 180711 GTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAAT 180770 ||||||||| | | ||| | ||||| | || |||||||| ||| |||| Sbjct 696697 CATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAAT 696756 Query 180771 TTTATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTT 180828 |||||||| || ||| |||| | ||| |||||||||||||| ||||| Sbjct 696757 TTTATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTT 696811 Query 180829 AGGATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCA 180886 |||| |||| || |||| ||| ||||||| ||||| || ||| ||| || | | | Sbjct 696812 AGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC- 696870 Query 180887 AAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATAT 180946 |||| || || ||| || | ||||||| || || || ||| |||||| ||| Sbjct 696871 AAGT-ATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTAT 696929 Query 180947 TCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACCCTTA 180993 ||| |||||||| ||||||||||| |||| |||| ||||| Sbjct 696930 AATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTA 696976 >seq2 Length=1760775 Score = 122 bits (134), Expect = 1e-22 Identities = 257/380 (68%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 |||||||||||| | |||||| ||||||||||| | || ||| | ||||| ||| Sbjct 534514 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 534573 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||||||||||| Sbjct 534574 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 534633 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| ||| || ||||||| |||| ||||| ||||||||| || | || Sbjct 534634 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 534693 Query 173068 ATCAAGGTATATTTATACTAAACC-GCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | || || |||||||| ||| | | Sbjct 534694 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAAG-TATATTTAATGAATATG 534752 Query 173127 ATGACCCTATTTTAAT---TTTTACTCCGGAAGGAGAA-----CCAACCAC----TTTTG 173174 |||| || ||||||| ||| | | |||||| || | |||||| || | Sbjct 534753 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 534812 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || || || || | ||||| | || ||||||||||||| || | Sbjct 534813 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 534872 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 534873 CATTTATTCCAAATTATAAT 534892 >seq8 Length=746845 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 201075 TTAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCT 201130 ||| | ||||||||||||||| | || ||||| | | |||||| || | | | Sbjct 498852 TTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTT 498908 Query 201131 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAA 201190 ||| || | || ||| || ||||||||||| |||||| ||||| || ||||| || Sbjct 498909 AAA-GATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAGGATATAA 498967 Query 201191 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||||||||||||| | ||| | ||| || | |||||||| |||| ||||| Sbjct 498968 TCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATT 499018 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 500054 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 500113 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 500114 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 500172 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| | |||||||| ||||||||| ||||||||| Sbjct 500173 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTAT 500218 >seq11 Length=1045168 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 || ||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 272352 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 272293 Query 201981 GCGAGAAGTC-ATGGTCAAGTAACAA-CATTACATCGTCAACCAAACTG-TGGTCGGTCC 202037 || ||| || | || | || |||| |||| || ||||| ||||| ||||| || Sbjct 272292 GCTAGATCTCGAGGGCCTAG--ACAATTATTAACACGACAACC-AACTGAAGGTCGATCA 272236 Query 202038 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 272235 AAAGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 272195 >seq5 Length=2639166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 52921 TCAACTTGATATTGGAGACATAGTCAAAAGACAACTAAGAAATGGAGATTGGGTTCTATT 52980 ||||||| | |||||||| ||||| ||||||| | | |||||||| || |||| Sbjct 1796681 TCAACTTAAAATTGGAGATATAGTAGAAAGACATATTTGTGATGGAGATATTGTATTATT 1796622 Query 52981 AAATCGTCAACCAACATTACATAAACCTTCCATG-CAAGCATTTATCGTA--GTTA---T 53034 ||| | ||||| | |||||| | | ||| | | || | || || | || | Sbjct 1796621 TAATAGACAACCCTCTTTACAT----CGT--ATGTCTATTATGTGTCATAAAGCTAGAGT 1796568 Query 53035 TATTGATGGTAAAACTTTAAGGATGAATTTAGCTATGGCTAAAGCTTACAATGCAGATTT 53094 ||| ||| |||||| || | | ||| | | | || |||| ||||||||||| Sbjct 1796567 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 1796508 Query 53095 TGATGGAGATGAAATGAATTTACATATTCCTCAGTCTTATGAAGCTACTGCAGAA 53149 ||||||||||||||||||||||||| | ||||| || | ||| ||| |||||| Sbjct 1796507 TGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAATCTAGAGCAGAA 1796453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655278386373000