Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq13 87.8 2e-12 >seq8 Length=746845 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| | ||||| ||||||||| | || ||| | || || | || ||||| Sbjct 498844 CTCATTTATTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTACAG-AATATTTA 498902 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 | || | |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 498903 C--ATTTTAAAGATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAG 498960 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | ||||| |||||||| ||| | ||| | ||| || |||||||||| ||||||||||| Sbjct 498961 GATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATTTA 499020 Query 192670 GCACTATAACTTATAATACATATACAGTTGAAGAAA 192705 | | | || |||| ||||||||| |||||||| Sbjct 499021 GAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 499056 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 500054 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 500113 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193461 |||||||||||| || | | |||| ||||| | ||||||| || | | Sbjct 500114 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 500172 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| ||| | |||||||| ||||||||| ||| ||||| || ||||| Sbjct 500173 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 500232 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 500233 CTGCTAAAATGTTAAAAGAA 500252 >seq13 Length=1563612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 ||||||| ||| |||| ||| || || |||| ||| | |||||| || | |||||| Sbjct 423807 AAAGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAA 423748 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425 ||| | ||||| |||||| || |||||| | ||||||| Sbjct 423747 TGAGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAG 423688 Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 50485 || | ||| | |||||||||| ||||||||||| ||||||||||| |||||| | ||| Sbjct 423687 CTGTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTC 423628 Query 50486 AATCATATGGAGCTACTGCTGAATTACAAGAATTAA 50521 ||||| ||| | | | ||||| || || | |||| Sbjct 423627 AATCACATGAAACCAGATCTGAAATAAAACATTTAA 423592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628529652241920