Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-18 seq3 87.8 3e-12 >seq11 Length=1045168 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 486373 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 486314 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 486313 AAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 486254 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 486253 TTTCAATAGTAT 486242 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 486601 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 486542 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 486541 AAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 486482 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 486481 TTTCAATAGTAT 486470 >seq3 Length=1889938 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/128 (74%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 || || || |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 1688201 TCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCAGCAAAA 1688260 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | |||| Sbjct 1688261 ATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTT 1688320 Query 81762 TCAATCGT 81769 ||||| || Sbjct 1688321 TCAATAGT 1688328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903408975349920