Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 300 4e-76 seq12 140 8e-28 seq5 118 3e-21 seq13 109 1e-18 seq2 105 2e-17 >seq11 Length=1045168 Score = 300 bits (332), Expect = 4e-76 Identities = 618/911 (68%), Gaps = 25/911 (3%) Strand=Plus/Plus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | | ||| |||||||| |||||||| Sbjct 531934 TAAATAAAGAAATAGATTATACAAGAGATTTTAACTATGATTATTTTGGATTCAAAACAT 531993 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | | |||||| | || | || | || ||||||||||| ||||| | | Sbjct 531994 TAGAAAGATCATATTTATTACGAATTAACAATAAAATTATTGAACGTCCACAACATTTAT 532053 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 | | | || | ||||| || ||| | ||||| || |||||| ||| ||| | Sbjct 532054 TAATGAGAGTATCAATTGGAATACATATAGATGATCTTGAAAAAGCT-TTA--GAAACAT 532110 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | | || | | |||||||||||||| ||||||| |||||| Sbjct 532111 ATCATTTAATGTCTCAGAAATATTTCACACATGCTACTCCTACATTATTTAATTCAGGAA 532170 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCT----TCTAGGAATTAACGATGATTCTATT 110555 | | |||| || | ||||||||||| |||| ||| | | |||||||| Sbjct 532171 CACCACGTCCACAAATGTCATCTTGCTTTCTATTATCTATGAAATCA----GATTCTATC 532226 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 |||||||| | ||| | | ||| || |||| | ||| ||||| | | ||||| || Sbjct 532227 GAAGGTATATTTGAAACATTAAAACAATGTGCTTTAATTAGTAAAACCGCGGGAGGTATA 532286 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 || || || || ||||| | | | | |||| | | | || ||| Sbjct 532287 GGAGTTGCTGTACAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATA 532346 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| | ||||||||||||||||| || || || || || | |||||| ||||| Sbjct 532347 TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAA 532406 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| || ||||| || || |||||| | ||| | ||||| |||||||| ||||| Sbjct 532407 GGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATT 532466 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| ||||| | | |||||||| || |||||| |||||| | |||||| Sbjct 532467 TTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTA 532526 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 |||||||| || ||| | | |||||||| |||||| | || |||||||| | | ||| Sbjct 532527 TTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGG 532586 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 | || ||||||||| || | ||| || || ||| | || |||| |||||| Sbjct 532587 ACACTAATGTGTCCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAA 532646 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAA 111029 | | || |||||||||| ||||| || || | ||| ||| ||| || ||| Sbjct 532647 AAATTATATACAAAATATGAAGAAGAA---AATTTAGGAAAAAAAACTGTTCTTGCACAA 532703 Query 111030 GAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 || | ||||| || | || ||| | |||||||| || ||||| || ||| Sbjct 532704 GATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAACTGGTGTACCATATATGTTATAT 532763 Query 111090 AAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 |||||| ||| |||| ||||||||||||| ||||||||||||||||| | |||||| Sbjct 532764 AAAGATGCAT-GTAATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAA 532822 Query 111149 TTTGTGCTGTG 111159 ||| || |||| Sbjct 532823 TTTATGTTGTG 532833 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 532953 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 533012 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || | || ||||| | ||| |||| ||||| || || |||||||||||||| Sbjct 533013 GAAGCTGAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCA 533072 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 || ||||||| | | || ||| | ||| ||||| |||||| |||||| || Sbjct 533073 GACACATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAA 533132 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || |||||||| |||| || ||| Sbjct 533133 AGAATATTTGAAACAATGTATTATGCAGCT 533162 >seq12 Length=931358 Score = 140 bits (154), Expect = 8e-28 Identities = 279/405 (69%), Gaps = 19/405 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||| ||||| | |||||||||||| | ||| ||||| Sbjct 696763 ACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACA 696704 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | ||| ||||||||||| | | | | | Sbjct 696703 TTCCATGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATA 696644 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| ||| |||| || ||| |||| | | || ||| | |||| | | Sbjct 696643 TTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATATCTGTATATTCAGCA 696584 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAGTTCCTTCAGGATATTCATTT 59173 || ||| | |||||| || ||||| | ||| |||||| || || | | || | Sbjct 696583 CCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGA--TCATTAA--CTTCTCTATG 696528 Query 59174 AAACCA----CGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACATT 59229 ||| | | | || | ||||||||||||| |||| | ||||| || ||||| Sbjct 696527 AAATAATTTTCTATTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATT 696468 Query 59230 ATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCTT 59286 || || ||| | || |||| || ||||| ||| || ||||||||| ||||| | Sbjct 696467 TTTTTC--TAACA-ATGTATTTCCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTC 696411 Query 59287 AATGCAAATTTTC-CAAGCAACtttttttGTTGTAAGCATTGGAA 59330 ||| | | | ||| || |||||||||||| | | ||||| Sbjct 696410 AATAATACCTCGCACAAATAA-TTTTTTTGTTGTTAATAATGGAA 696367 >seq5 Length=2639166 Score = 118 bits (130), Expect = 3e-21 Identities = 119/154 (77%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| ||||| || | ||| |||||||| ||| |||||||| | ||| Sbjct 1796623 TTTAATAGACAACCCTCTTTACATCGTATGTCTATTATGTGTCATAAAGCTAGAGT---- 1796568 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| ||||| ||||||||||| ||||| Sbjct 1796567 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 1796508 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||||||||||| | |||||||||||| Sbjct 1796507 TGATGGAGATGAAATGAATTTACATGTACCTCAA 1796474 >seq13 Length=1563612 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | ||||||||| | ||||||||| Sbjct 423805 AGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAATG 423746 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| ||||||| ||| |||| || | |||||||| |||||| || | Sbjct 423745 AGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAGCT 423686 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| ||||||||||| | ||| || ||||| Sbjct 423685 GTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTCAA 423626 Query 305486 TCA 305488 ||| Sbjct 423625 TCA 423623 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | ||||| ||| Sbjct 422505 ATAGATCATTACCACATTTTATCAAATTTGATTATGGCCCAGAAAGTAGAGGATTTGTAT 422446 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| || || | || ||| ||| |||||||| || | || Sbjct 422445 CAAATTCTTATTTAAGT--GGGTTAACACCACAAGAAGTCTTTTTTCATGCTATGGGAGG 422388 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 422387 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 422328 Query 306427 ATTAATGAAAACGCTTGAAGAT 306448 |||||| ||| | | |||||| Sbjct 422327 ATTAATTAAAGCTATGGAAGAT 422306 >seq2 Length=1760775 Score = 105 bits (116), Expect = 2e-17 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| ||| |||||| | | | | || || |||| | | | || |||||||| Sbjct 1205357 AAAATTTGAAATGAGCACATGAGAGTCTCATCAACACTCATCATAGCTCCTGCATTATCA 1205416 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | | || |||||||| |||||||||| ||||||||||| | || ||| || Sbjct 1205417 AATTC-TCCACAATAATTTGGAGCTGAAAATAAAGTAACTAATTGTCTTTTTGCAAAAAA 1205475 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAA-CTCCTAtttttt 167379 |||||| |||||||| ||||||| |||||| | || ||| |||| || | |||| | Sbjct 1205476 TTCATATCCATCTTCTACAACTTGATGGGCTCTACATATAAGATCAAGTTCATGTTTTCT 1205535 Query 167380 tAAGAAAATTA 167390 ||| ||||||| Sbjct 1205536 TAA-AAAATTA 1205545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809804410317