Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq7 100 3e-16 seq6 84.2 2e-11 >seq7 Length=819697 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39761 CATAACGTAACTATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGA 39820 |||| |||| || | ||||| ||||||||||||||||| || ||| ||||||||||| Sbjct 758600 CATAGTGTAAATAATAAGCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGG 758659 Query 39821 AGGTCCCGGGTTCAATCCCCGGTGCCCGTATTT 39853 || ||||| |||| |||| |||||||||||||| Sbjct 758660 AGATCCCGAGTTCGATCCTCGGTGCCCGTATTT 758692 >seq6 Length=2614191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| || ||| | |||||||| || ||||| |||| ||| Sbjct 2585444 GCGGGCATGGTCTAGTGGCTATGACGCCTGCCTAACACGCAGGAGATCCCGAGTTCGATC 2585503 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 2585504 CTCGGTGCCCGTATTT 2585519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466123652167680