Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=2614191 Score = 114 bits (126), Expect = 2e-20 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 || ||||| | ||||||||| || |||||||| || ||| | ||| | || | | Sbjct 1007093 GCATTAATATTTGGTATAACAGGACAGGATGGGTCATATTTAAGCGAATTGCTTTTAGAT 1007034 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || |||||||| ||||| ||||| | ||| | ||||||||| |||||| Sbjct 1007033 AAAGGATATGAAGTTCATGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 1006974 Query 161084 GATCATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATA 161143 |||||||| || || | ||| | | || || || ||||| ||| || ||| Sbjct 1006973 GATCATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATA 1006914 Query 161144 GTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCAT 161203 | ||| | || | || || |||| |||| || || || ||| ||||| |||||| Sbjct 1006913 TTTTCTTTAATAACTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCAT 1006854 Query 161204 GTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTA 161263 || |||||| ||| || |||||||||||||||||| | ||| | || || ||| Sbjct 1006853 GTAAAAGTAAGTTTTGAATTACCTGAATATACAGCACAATGTACAGCTATAGGTACACTA 1006794 Query 161264 AGAGTATTGGA 161274 ||| |||| || Sbjct 1006793 AGAATATTAGA 1006783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729927802548360