Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq3 116 3e-21 >seq11 Length=1045168 Score = 134 bits (148), Expect = 1e-26 Identities = 680/1067 (64%), Gaps = 34/1067 (3%) Strand=Plus/Minus Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 ||||||||||| |||||| ||||| | || |||||| | || |||||| Sbjct 533483 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATA 533424 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 || ||||| || || | ||||| || ||||| || || || || ||||||| || | Sbjct 533423 ATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGA 533364 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || || ||||| ||| | | |||||||| | | || ||| | | |||||| Sbjct 533363 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTT 533304 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAA 130968 || ||| |||||||||||| | | || | || || |||||||||||||| Sbjct 533303 TTTTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTACATTCCACATATCAAA 533247 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 ||||| ||| |||| ||| || || || || | ||||| || ||| | | | Sbjct 533246 TTGTAATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTG 533187 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || ||| |||||| | ||||| || ||||| ||| |||||| Sbjct 533186 TGCTAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATT 533127 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 ||||| ||| |||| | || || ||| || | | | ||||| | |||||| | Sbjct 533126 TAATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAA 533067 Query 131149 ACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT 131208 || |||| || | || | |||| |||| || ||| |||| | || | Sbjct 533066 TCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAAT 533007 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 || ||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 533006 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 532947 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATT-GATTTACACATA 131327 | ||||| | |||||||| |||| | ||||||| | | | || | Sbjct 532946 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 532888 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 |||| |||| ||||||||| || ||| ||| | || ||| | || ||||| Sbjct 532887 TTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGT--ATATTCAATTATTTCACA 532830 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||| | || || || || ||||||| |||||| ||||| ||| ||||| Sbjct 532829 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-ACATG 532771 Query 131446 G-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | |||| ||| | ||| | | || Sbjct 532770 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAAT--AGCAAA 532713 Query 131505 --AGAGTTTTCGAGCAG--ACAATTGATATTTGTA--TTGGCCGCGTTTTTCGTAATTTT 131558 | | | | | ||| ||| || | || || || | || ||| || ||| Sbjct 532712 CCATAAATCTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTC----TTCTTCATATTTTG 532657 Query 131559 CGTACAACGTTTCAAAGTTTTGGCCAAACGA---ACTGTCCAAATTGGGACATTCGCTGG 131615 || || ||||||| | || || | || ||| || |||||||| | | Sbjct 532656 TATATAATTTTTCAAATTCTTCACCCCAAGATTCACTT---AACCCTGGACATTCATTAG 532600 Query 131616 GACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCC 131675 |||||||||| | ||| | || | || |||| |||||||| ||||| || |||| Sbjct 532599 GACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCC 532540 Query 131676 ATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAA 131734 | | || || || | |||||||||| || |||||| || |||| ||||||| | ||| Sbjct 532539 AAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTA-CCATGATTTTTTCTTAAA 532481 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 532480 TCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGC 532434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || |||||||||||||| || || | | |||| | | || Sbjct 486620 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTT-CTACCATC 486562 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 486561 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATC 486502 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 486501 TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 486442 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 486441 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 486402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || | |||||| || || ||||||||||| || ||||| | | |||| | | || Sbjct 486848 AAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTAC-CATC 486790 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | ||||| || || || | ||||||||||| Sbjct 486789 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATC 486730 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 486729 TTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 486670 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 486669 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 486630 >seq3 Length=1889938 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || |||||||||||||| ||||| | | ||||| || | |||| Sbjct 1688182 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGC-CATCTT 1688240 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | |||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 1688241 CTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 1688300 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || ||| | |||| | |||||| | | |||||| || ||||| || | || Sbjct 1688301 GAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1688360 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1688361 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1688391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933379759064