Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 152 6e-32 >seq11 Length=1045168 Score = 152 bits (168), Expect = 6e-32 Identities = 714/1127 (63%), Gaps = 10/1127 (1%) Strand=Plus/Plus Query 104480 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 104539 || ||| | |||| | || ||| |||| | || || |||||| |||| ||||| | Sbjct 532299 CAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 532358 Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC-- 104597 |||||||| | | || ||||| | ||||| | |||||| |||||| ||| | Sbjct 532359 GTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAA 532418 Query 104598 -GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 |||| || ||| | || || ||| | || |||||||| | ||||| | || || | Sbjct 532419 AGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATTTTTGAATTTTTA 532478 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || | || || ||| | || || | | ||| | || | ||| | Sbjct 532479 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTATT 532538 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 ||| | || ||| | || ||||| ||||| | || | | | |||||| | || | ||| Sbjct 532539 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGGACACTAATGTGT 532598 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || | | || || | || | |||||| || |||||| | || ||| Sbjct 532599 CCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACA 532658 Query 104837 AAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 104896 || || || |||||| | | | || || | || ||| | ||| ||| Sbjct 532659 AAATATGAAGAAGAAAATTTAGGAAAAAAAACTGTTCTTGCACAAGATTTATGGTTTGCT 532718 Query 104897 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 ||| | | ||||| || |||||| |||||| ||| | || ||||| || ||||| Sbjct 532719 ATTTTACAAAGTCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAAT 532778 Query 104957 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||||||| ||||| || || || || ||| | ||| ||||| Sbjct 532779 TCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATA 532838 Query 105017 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 | |||| |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 532839 ATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGC 532898 Query 105077 AAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 105136 || | ||| ||| ||| | ||| |||||||| | ||||| | | || |||| ||| Sbjct 532899 AAATTTGTTGATAGAGAAAAAAAAGAATTTGATTTTAAAAAATTATATGATATTACTAAA 532958 Query 105137 ACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 105196 | | | || | ||| || | | | ||||||| ||||||| |||||| || | ||| Sbjct 532959 ATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCT 533018 Query 105197 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTA 105256 ||||| |||| ||||| || || ||||| | || || || || | || || | Sbjct 533019 GAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGACACA 533078 Query 105257 TTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATA 105316 || || |||| | | ||| ||| || || ||||| || ||| | ||| | ||| Sbjct 533079 TTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAAAGAATA 533138 Query 105317 TTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGT 105376 ||||| || |||||| | || ||| | || | | || || ||| | | |||| Sbjct 533139 TTTGAAACAATGTATTATGCAGCTTTAGAAATGTCTGTTGAATTAGCACAAATACATGGA 533198 Query 105377 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||||||| | | | | ||| ||||| |||||| | | ||||||||||||| | Sbjct 533199 CCATATGAATCATATAAAGGTAGCCCAGCAAGTCAAGGGATATTACAATTTGATATGT-G 533257 Query 105437 GAAGGTGAGACCA-AGCTTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGA 105492 ||| || | | | | | | || || |||| | | | || || | ||| | Sbjct 533258 GAATGTAAAAGTAGATAATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTA 533316 Query 105493 -GAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA 105551 | | || | | || ||| || | || || ||||||||||| || || |||||| Sbjct 533317 TGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAA 533376 Query 105552 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||| |||||||||| || ||||| || || | ||||||||| Sbjct 533377 TTTTGGGAAATAATGAATCATTCGAACCATATACAAGTAACATCTAT 533423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259363720280