Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq12 129 5e-25 >seq12 Length=931358 Score = 129 bits (142), Expect = 5e-25 Identities = 232/333 (70%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||| ||||| ||||| | || | ||| ||||||||||||||| || ||||| || Sbjct 696871 TGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGAACTCCTAGTCCT 696812 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 | ||| | ||||||||||| | |||||||| ||| | | |||||||||||| Sbjct 696811 AAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAATTGA 696752 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCATGCACAC 111963 || | | |||||| ||||| |||||||| || | | | | ||||||||| Sbjct 696751 CATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCATGCACAT 696692 Query 111964 ATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTG 112022 | || || | ||| | ||||| ||| || || ||| | ||| | ||| || || Sbjct 696691 AAAATAATTCGTCTACATGTAG-GATCATTTTTAATTAAATTTATAATATTTTTTAGTTG 696633 Query 112023 GTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCCCATAGTG 112079 || | |||||| | |||||| | || | ||| ||||| || || ||| | || Sbjct 696632 ATCAACACCTTTATCTTTATAATTATCATGCATATC---TGTATATTCAGCACCAAAATG 696576 Query 112080 TCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 |||||||||||||||||||||||| || ||||| Sbjct 696575 TCTCCATTGGAATCCATAAATAGGACCAAGATC 696543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391944658963111