Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 113 3e-20 >seq11 Length=1045168 Score = 113 bits (124), Expect = 3e-20 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||||||||| || || ||||||| | ||||| | |||||| || ||||| Sbjct 486827 TCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAA 486768 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | |||||||| || || | |||||| || ||| ||| ||| | |||||| Sbjct 486767 ATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGAT-TTTAGCTTTAACATT 486709 Query 34635 TAAAATTGTGTC--TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | ||| || || | | ||| || || | ||||| ||||| || ||||| ||||| Sbjct 486708 TTCAATAGTATCGGATGGTTCT--ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTT 486651 Query 34693 ACAAAAATCTGCAT 34706 |||||||||||||| Sbjct 486650 ACAAAAATCTGCAT 486637 Score = 105 bits (116), Expect = 4e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || ||||| | ||| || |||||||| |||||||| || ||||||| | ||| Sbjct 486620 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 486561 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||| ||||| | ||||| || || || | ||| || || ||| Sbjct 486560 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT 486501 Query 34615 GTGATCTTTTGTTTTAACGATAA-AATTGTGTCT--TCGCTCTCCACTTCCACGGTTATC 34671 ||| ||| | |||||| | ||| || || | | ||| || || | ||||| Sbjct 486500 -TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA--TCAAGAGTTATG 486444 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| ||||| |||||||||||||| Sbjct 486443 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728844353901