Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 143 2e-29 seq3 138 1e-27 >seq11 Length=1045168 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | || || || | || |||||||| || ||||| ||| Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| |||||||| || || || |||||| Sbjct 486469 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 486528 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||| ||||| || || | || ||||| || Sbjct 486529 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 486588 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || || || |||||||| ||||| Sbjct 486589 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 486620 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | || || || | || |||||||| || ||||| ||| Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||| ||||| || || || || || ||| Sbjct 486697 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 486756 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||| ||||| || || | || || || ||| Sbjct 486757 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 486816 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || || ||||||||| | ||||| Sbjct 486817 ATTCAAAAAGAATCAACCTTACATCTAGTTTT 486848 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| |||||||| || || || || || | ||||| | || ||| |||||||||| Sbjct 486215 CTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAAATTCAAG 486274 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | |||||||| || || || |||||||| | ||||| | || || |||||||| |||| Sbjct 486275 ATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAG 486334 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 | || || | || ||||| || |||||||| || || || |||||||| ||||| Sbjct 486335 ATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTTAGTTTT 486392 >seq3 Length=1889938 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | ||||| || | || |||||||| || ||||| || Sbjct 1688391 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCT 1688332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||||| |||||||| || || || |||||| Sbjct 1688331 GACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 1688272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || ||||| || ||||| | || | || || || || Sbjct 1688271 CAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTATAAT 1688212 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| ||||| |||||||||||||| Sbjct 1688211 ATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917329013440