Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 138 8e-28 seq3 125 5e-24 >seq11 Length=1045168 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | |||||| || |||||||| | || || ||||| Sbjct 486469 GATACTATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCA 486527 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || ||||| || Sbjct 486528 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 486587 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 486588 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 486635 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | ||||| || ||||| || | || || || || Sbjct 486697 GATACTATTGAAAATGTTAAAGC-TAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCA 486755 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || || || || Sbjct 486756 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAA 486815 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || |||||| |||||||||| || ||||||| Sbjct 486816 CATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 486863 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAA 23696 |||||||| || ||||| || || || | | || ||| |||||| | ||||| | ||| Sbjct 486208 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 486267 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || |||||||| | || || |||||||| | ||||| ||||| || ||||| Sbjct 486268 A-TTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACA 486326 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||| | | || || ||||| || || |||||||| || || |||||||| Sbjct 486327 ATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTT 486386 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||||||||| || ||||||| Sbjct 486387 AGTTTTAAGATTAAGAGGAGG 486407 >seq3 Length=1889938 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || |||||||| |||||||| || ||||| | Sbjct 1688394 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1688335 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||||| | ||||| | |||| || || |||||||| | || || || Sbjct 1688334 TCTGACACTATTGAAAATGTTAAAGCTAAAA-TTCAAGATAAAGAAGGAATTCCTCCTGA 1688276 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||| ||||| || ||||| | ||||| | | || ||| || || Sbjct 1688275 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 1688216 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| || |||||||| || Sbjct 1688215 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008788460076