Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11 104 6e-17 seq196 84.2 5e-11 >seq11 Length=1045168 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 486606 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 486547 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||| || || | || |||||| || || || || ||||| || ||||| || ||| || | Sbjct 486546 AGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAAT-TTTAGCTT 486488 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || || || | ||| || || | || || || || || || || | Sbjct 486487 TAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATG 486428 Query 225695 TTTTTATGAACACTTGCAT 225713 |||||| || | ||||| Sbjct 486427 TTTTTACAAAAATCTGCAT 486409 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | | ||||| |||||||||| || |||||| Sbjct 486833 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 486774 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||||||||| || ||||| || || || |||||||| ||| || || Sbjct 486773 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGAT-TTTAGCTTT 486715 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || || || || || || || Sbjct 486714 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 486655 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | ||||| Sbjct 486654 TTTTACAAAAATCTGCAT 486637 Score = 91.5 bits (100), Expect = 4e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 486378 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 486319 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || || | || |||||| || || ||||| ||||| || ||||| || ||| |||| Sbjct 486318 AGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 486260 >seq196 Length=6512 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 1709 ATACTTCTGGATGACCAAAAAACCAGAATAAATGTTGATATAATATAGGGTCTCCTGCAA 1650 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||||||| | ||| | ||| |||| Sbjct 1649 AAGTTGGATCAAAAAATAATGTATTAAAATGTAAATCTGATAATAACA 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528189976718