Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 >seq2 Length=1760775 Score = 206 bits (228), Expect = 2e-48 Identities = 590/897 (66%), Gaps = 15/897 (2%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 1547453 AACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1547394 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| ||| || || || | | | || ||| ||| || Sbjct 1547393 AGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA 1547334 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | |||| ||||| |||||||| ||||| || |||||| | || || Sbjct 1547333 ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCAT 1547274 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1547273 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1547219 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | || || | | ||||||| |||| | | | | Sbjct 1547218 GCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATAA 1547159 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| ||||||| ||| ||||| || || || ||||| | ||| ||| ||| Sbjct 1547158 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1547099 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| |||||| || || ||| ||| | Sbjct 1547098 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTA 1547039 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| |||||||| ||| ||||| | || | || || | | | Sbjct 1547038 AATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG---TA 1546982 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || |||||||| ||||| ||||| || || | || || | | ||| Sbjct 1546981 TCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATA 1546922 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | |||||| || | |||| | |||| ||||||| | || |||| || ||| Sbjct 1546921 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 1546862 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || ||||||||||||||||||| | ||| || ||||| ||||| | | ||||| Sbjct 1546861 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1546802 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACT 4960 | | || ||||| | ||||| || ||| | || ||||| ||| || || ||||| Sbjct 1546801 ATAATTTCTACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACAATTCCATCACT 1546743 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 ||||||||||| || |||||||| |||||| | | ||| | || | ||||| Sbjct 1546742 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 1546683 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | | |||||| | | |||||||| ||||||| | |||||||| || ||||| || Sbjct 1546682 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1546623 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||||| | | ||||| ||||||||| ||| ||| | | ||||||||| Sbjct 1546622 TTTTTTGTAAAAATTCCAAACTTCAGGATACATAATAGGATGCAATGTAAATCTGTT 1546566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048574680601