Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 553 2e-152 seq2 221 2e-52 >seq11 Length=1045168 Score = 553 bits (612), Expect = 2e-152 Identities = 1168/1719 (68%), Gaps = 44/1719 (3%) Strand=Plus/Minus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| |||||| | || | ||||| ||||| | ||||| ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGA-ACC 77041 |||| |||||| | | || ||| | |||| | |||| | || | | | || | || Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATAT-ATTGTACACT 533541 Query 77042 ACCATC-TGAT--AT-AATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 |||| ||| || |||||| | || ||||| |||| ||| | ||||| | | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGG--CCTCTATCAAA 533484 Query 77098 AAACTCTA--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGT 77155 || ||| | | |||||||||||| | ||||| ||| ||||| | | | Sbjct 533483 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATA 533424 Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 || || ||||| ||||||||||| | |||||||| |||||||||||||| | ||| || Sbjct 533423 ATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGA 533364 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 ||| |||||||||||||| | | | | |||||| | ||||| | || ||||| | Sbjct 533363 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTT 533304 Query 77276 TTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACA---ACATCCCAAAGATCGTATTG 77332 ||||| | | |||||||||| | | ||| |||| ||| | ||| |||| Sbjct 533303 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTG 533244 Query 77333 TAGAATTCCGTTACTAGCATATGAT-CCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 || || || | ||| || | | | || ||||||| |||||| ||||| | | ||| | Sbjct 533243 TAATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTG 533185 Query 77392 CTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 ||| |||| | | ||| || ||| | ||||| |||||||| || || | ||||| | Sbjct 533184 CTAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTA 533125 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 |||| |||||| | ||| | ||||| |||||| ||||| | |||||||||| Sbjct 533124 ATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 533065 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 | || ||||| || |||||||||| |||||| ||||| || ||| ||||||| ||| | Sbjct 533064 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 533005 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCT 77631 | |||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 533004 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 532945 Query 77632 TTAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAG 77685 || ||| ||||||||| | || ||||| |||||| || || || || | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATA 77745 | || | ||||||||| ||||| |||| || | ||||| ||||| || ||||| Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 77746 GATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCT 77805 |||||||||||| || || || | ||||| ||| || || ||| |||| || | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 77806 TATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 77865 |||| | ||| | || || ||||| || || || | ||||| ||| | | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA--A 532707 Query 77866 CTCTAGCTTTTATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGAGTATATAGCC 77922 ||| | | | | || ||| | || | ||| |||||||| ||||||| Sbjct 532706 ATCTTG-TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 532648 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||||||||| || |||||| ||| || || || |||||||| || ||||| | || Sbjct 532647 TTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTG 532588 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | | || ||| || |||| ||||||||| | |||||||| ||| | |||| || Sbjct 532587 TCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAA 532528 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| ||||| | ||| |||||| || || ||| ||| | | ||| | ||| || | Sbjct 532527 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAA 532468 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||||||||||||||||||||||| ||||| || | | || || ||| || | Sbjct 532467 AAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCAC 532408 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||||| |||||| || || | |||| ||||||| |||||||||| | ||| || | Sbjct 532407 CTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTG 532348 Query 78223 ATGTTCCATTTGTTCCAGAAATATAA-----CT-TCCACTTGCGCGAATAT-TACTAATG 78275 || | ||||| ||||| ||||||| || ||| ||| |||| | || | Sbjct 532347 ATATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTT------ATATCTTGTACAG 532294 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 | | ||||| ||||| || | ||| |||| ||| || |||| ||||| || | Sbjct 532293 CA-ACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAAT 532235 Query 78336 ATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATG 78394 ||||| || ||| || |||| | ||| ||||| || |||||||| || | Sbjct 532234 ATACCTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACG 532176 Query 78395 AACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAG 78454 ||||||| |||||||||||| |||| ||||| || || |||| | ||| | || Sbjct 532175 TGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAA 532116 Query 78455 ATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCAT 78514 || |||||||| | |||| ||| | || | ||| ||||| | | ||| | ||| Sbjct 532115 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCAT 532056 Query 78515 CAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 || | ||| || || | ||||| | ||||| || ||| || || |||||| |||| Sbjct 532055 TAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTC 531996 Query 78575 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 || ||||| || |||||||| | || ||| ||||| Sbjct 531995 TAATGTTTTGAATCCAAAATAATCATAGTTAAAATCTCT 531957 >seq2 Length=1760775 Score = 221 bits (244), Expect = 2e-52 Identities = 392/563 (70%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| ||||||| ||| | ||| ||||| |||||||||||||| ||| |||| Sbjct 1547158 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1547099 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||| ||||| ||| |||| Sbjct 1547098 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1547041 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||| ||||| |||||||| ||| || || ||| ||| | || | || || Sbjct 1547040 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAA--GAATTTGT 1546983 Query 48313 TG--TGTATCCACCGTTGTGC--CCAATCA-GCCTTCTTCTTTACACAAGGCATTGTTTC 48367 | |||||| || || || || | || || || || | | || || |||| Sbjct 1546982 ATCATTTATCCA---TTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTC 1546926 Query 48368 TATAGCATTAAAGAGAAAGtt--tttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 ||||||| ||| | || || | |||| || |||||||| ||| |||| ||||| Sbjct 1546925 AATAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAAT 1546868 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 | |||||| |||| || || |||||||||| || || ||||| ||||| | | Sbjct 1546867 AAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTT 1546808 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545 ||||| | || | ||| || | ||||| ||||||||| || ||| |||||| Sbjct 1546807 GCTTCAATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCA 1546748 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT 48605 ||||| || |||||||||||||| |||||||| ||||||| |||||| ||| | | | | Sbjct 1546747 TCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAAT 1546688 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 || | | || || | ||| | |||| ||| | ||||||||||||||||||||| || Sbjct 1546687 TTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCT 1546628 Query 48666 TCTGCTTTTTTATACATATTCCA 48688 || |||||||| || | |||||| Sbjct 1546627 TCAGCTTTTTTGTAAAAATTCCA 1546605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667089378080