Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 571 8e-158 seq2 230 3e-55 >seq11 Length=1045168 Score = 571 bits (632), Expect = 8e-158 Identities = 1168/1717 (68%), Gaps = 38/1717 (2%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| | || | ||||| ||||| | ||||| ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 |||| |||||| | | || ||| | |||| | |||| | | ||| ||| | | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 533540 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || || |||||| | || || || |||| ||| | ||| || | Sbjct 533539 CCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAAG 533481 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | |||||||||||||| ||||| ||| ||||| | || | || Sbjct 533480 ATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAATA 533421 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 || ||||| ||||||||||| | |||||||| |||||||||||||| | ||||||||| Sbjct 533420 GATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 533361 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || ||||||||||| | | | | |||||| | ||||| | || ||||| | ||| Sbjct 533360 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 533301 Query 75874 TAGATATTTCCAATCCCAA-AGATCTGATGGTACA---ACATCCCAGAGATCGTATTGTA 75929 || | | |||||||||| | | | || ||| |||| ||| | ||| |||||| Sbjct 533300 TAATAAATCCCAATCCCAATATTTATTATC-TACTTTTACATTCCACATATCAAATTGTA 533242 Query 75930 GAATTCCGTTGCTAGCATATGAT-CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988 || || | || || | | | || ||||||| ||| || | || | ||| ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 | ||| | | ||||| || | ||||| |||||||| || || | ||||| | Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 |||| |||||| | ||| | ||||| |||||| ||||||| ||||||| ||| Sbjct 533122 TCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCCT 533063 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 || ||||| || |||||||||| |||||| ||||| || ||||||||||| ||| ||| Sbjct 533062 TGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGG 533003 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTT 76228 |||||||| | || |||||||||| | |||||| || | |||| | || | | Sbjct 533002 TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT 532943 Query 76229 AGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAA----CATATTAAGAGCTAT 76278 | ||| ||||||||| |||| |||||| ||||| |||| | || || Sbjct 532942 AATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAAT 532887 Query 76279 AGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCA 76338 || || | ||||||||| ||||| |||| || | ||||| ||||| || || Sbjct 532886 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACA 532827 Query 76339 TAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTC 76398 || ||||||||| || || ||||| | ||||| ||| || || ||||||| || Sbjct 532826 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATC 532767 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||||| | | | | || |||||||| || || || | ||||| ||| | Sbjct 532766 TTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA- 532708 Query 76459 GACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAA 76515 | ||| | | | | || ||| | || || ||| |||||||| ||||||||| Sbjct 532707 -AATCTTG-TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAA 532650 Query 76516 CCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAA 76575 ||||||||| || |||||| ||| || || ||||||||||| |||||||| | Sbjct 532649 TTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAG 532590 Query 76576 TGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 || ||| | | || ||| || || | ||||||||| | |||||||| ||| | |||| Sbjct 532589 TGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 532530 Query 76636 AAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| ||||| | ||| |||||| || || ||| ||| | | ||||| || || Sbjct 532529 AAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 532470 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | ||||||||||||||||||||||| ||||| || | | ||| || ||| || Sbjct 532469 AAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 532410 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 || ||||||| |||||| || || | |||| ||||||| |||||||||| | || || Sbjct 532409 ACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 532350 Query 76816 AGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAATAGAT 76873 ||| ||||||| ||||| |||||| | ||| | | | |||| | || Sbjct 532349 TGATATACCATTAGTTCCTCTAATATAAGAATTC--TGTCCTCTTATATCTTGTACAGCA 532292 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| ||||| || ||||| |||| |||||| |||| ||||| ||| | || Sbjct 532291 ACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATA 532232 Query 76934 CCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 || || ||| ||| |||| | ||| ||||| || |||||||| || | Sbjct 532231 CCTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGG 532173 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||||| |||||||||| ||||| ||||| |||| | ||| | || || Sbjct 532172 TGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATG 532113 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || ||| | ||| | ||| ||||| | | || | ||| || Sbjct 532112 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAA 532053 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| || || ||||| | | | ||||| || ||| || || |||||| |||| || Sbjct 532052 TAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAA 531993 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 ||||| || |||||||| | || ||| |||||| Sbjct 531992 TGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTT 531956 >seq2 Length=1760775 Score = 230 bits (254), Expect = 3e-55 Identities = 398/573 (69%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| ||||||| ||| | || ||||| |||||||||||||| ||| |||| Sbjct 1547158 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1547099 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | |||||| || || ||| |||| Sbjct 1547098 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1547041 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCAT 46798 ||| ||||| ||||||||| || || |||| ||| ||| | || | | || Sbjct 1547040 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTAT 1546981 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 |||| ||||| | |||||| || || || || | | || || |||| | Sbjct 1546980 CATTT---ATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1546924 Query 46859 TAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 |||||| ||| | || || | |||| | |||||||| ||| |||| ||||| | Sbjct 1546923 TAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAA 1546866 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 |||||| |||| ||||| || ||||||| ||| || ||||| ||||| | |||| Sbjct 1546865 ACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGC 1546806 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 |||| |||| | ||| ||| | ||||| || |||||| || || |||||||| Sbjct 1546805 TTCAATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATC 1546746 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||| || ||||||||||| || |||||||| ||||||| |||||||| | | | | ||| Sbjct 1546745 ACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTT 1546686 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | | || || | ||| | |||| ||| | ||||||||||||||| ||||| || || Sbjct 1546685 TTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTC 1546626 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATA 47189 |||||||| || | |||||| | ||| |||| Sbjct 1546625 AGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932644399040