Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 2e-15 seq3 95.1 3e-14 >seq11 Length=1045168 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || |||||||| || || ||||| | || ||||| |||||||||| Sbjct 486612 ATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTG 486553 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | || || || || | | ||||||||| || ||||||||||| Sbjct 486552 TTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTT 486493 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | || || ||||| |||||||| || ||||| || || Sbjct 486492 AGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGT 486433 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | |||||| Sbjct 486432 TAATGTTTTTACAAAAATCTGCAT 486409 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || |||||||| || || ||||| | || ||||| |||||||||| Sbjct 486384 ATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTG 486325 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | || || || || | | |||||||| || ||||||||||| Sbjct 486324 TTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 486265 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| ||| | || | | || || |||||| |||||||| |||||||| || Sbjct 486264 AGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 486208 >seq3 Length=1889938 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| || || || || | ||| ||||| |||||||||| ||| || Sbjct 1688195 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1688254 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | |||||||| || ||||||||||| ||| Sbjct 1688255 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 1688314 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || || || |||||||| || ||||| || || | || Sbjct 1688315 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1688374 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1688375 TTTACAAAGATTTGCATTTT 1688394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817887684187