Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq3 98.7 8e-16 >seq11 Length=1045168 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| || || || |||||||| || | || ||||| | Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 486469 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 486528 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||||| |||||| || ||| | | ||||||||| Sbjct 486529 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 486588 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || |||||||||| || Sbjct 486589 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 486620 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| || || || |||||||| || | || ||||| | Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||| || ||||| || |||| || ||| Sbjct 486697 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 486756 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||||| |||||| || ||| | | || ||||| Sbjct 486757 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 486816 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || ||||| |||| || Sbjct 486817 ATTCAAAAAGAATCAACCTTACATCTAGTTTT 486848 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| || |||||||| |||| ||||||||||| | |||| ||| || ||| Sbjct 486265 AAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 486324 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 ||||| |||||| || ||| | | ||||||||||| ||||||||||| || ||||| Sbjct 486325 CAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACAT 486384 Query 111304 TTAGTGTT 111311 ||||| || Sbjct 486385 TTAGTTTT 486392 >seq3 Length=1889938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 1688394 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1688335 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || ||| | || ||| |||||| || |||||||| |||| ||| Sbjct 1688334 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 1688275 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||||| | |||| ||| || ||||| || |||||| | ||| | | || ||| Sbjct 1688274 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 1688215 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGT 111308 ||||| |||||||| || || ||||||| || Sbjct 1688214 AATATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421810187257672