Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq12 116 5e-21 seq9 100 4e-16 >seq12 Length=931358 Score = 116 bits (128), Expect = 5e-21 Identities = 236/340 (69%), Gaps = 18/340 (5%) Strand=Plus/Plus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 ||| | || ||| |||| || || ||||||||||||||||| || || | | || || Sbjct 696543 GATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATACAGATATG 696602 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACG-TTGA 50595 | | | ||||| ||| | |||| || |||||||| |||| ||||||| || | Sbjct 696603 C-ATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAA 696661 Query 50596 AAACAAACCCCGACGATCGGCGTATT--TTAATGACCGCCTGGAATCCAACCGATATAGA 50653 ||| | || | | | | || ||| || ||| || |||||| || ||| |||| Sbjct 696662 AAATGATCCTACATG-TAGACGAATTATTTTATGT--GCATGGAATGTAAAAGATTTAGA 696718 Query 50654 TCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATG 50709 | ||| | |||||||| |||||| |||||||||||||||||| | || || Sbjct 696719 TAAAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAA-- 696776 Query 50710 TTTTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAAC 50768 ||||| ||| ||| ||||||||||| |||| | || |||| ||||| || ||| Sbjct 696777 --TTATCATGTATTATG-TATCAAAGATCTTGTGATTTAGGACTAGGAGTTCCATTTAAC 696833 Query 50769 GTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAG 50808 | |||||||| || |||| || ||| |||| || |||| Sbjct 696834 ATTGCTTCTTATTCTATATTTACATATATGATAGCACAAG 696873 >seq9 Length=899110 Score = 100 bits (110), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||| | | || | || || |||||| ||||| || | ||||| || Sbjct 157519 TTTAATATTTGGATTCTACCTTCTTTATTTGGTAATGATATTTCAATATGTAATTCAAAT 157578 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || ||||||||||||||||| || |||| || ||| || ||||| || || | | Sbjct 157579 CGACCTGGTCTTAATAATGCTTCATCTATTAGATCTATTCTATTTGTCATTCCGATTAAT 157638 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 || || || |||||| | || || |||||||| || ||||||||||| |||| Sbjct 157639 AATATATTATTTAAACTGTTAACTCCATCTATTTTTGATAATAATTGATTAACTA 157693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667073557327320