Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq362 134 1e-26 >seq362 Length=22319 Score = 134 bits (148), Expect = 1e-26 Identities = 306/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 || ||||| || ||||| || ||||| |||||||||||||| || ||||||| ||| | | Sbjct 17283 GATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATACAGA-TAT 17341 Query 18852 CAATCA-AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAA 18910 || | || ||| | | |||| | ||||| || ||| | ||||| || |||||| Sbjct 17342 GCATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAA 17401 Query 18911 AACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTT 18970 || | || | | ||||||| ||| ||| | |||||| ||| ||| | Sbjct 17402 AAATGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATAA 17461 Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030 ||||| | ||||||||||||| | |||||||| ||||| ||| | || ||||||| Sbjct 17462 AATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATC 17521 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 || | || || ||||| | ||| | || || || || || || ||||||||| Sbjct 17522 ATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAGGAGTTCCATTTAACATTGCTTC 17581 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAA 19149 ||| | | |||| || || |||| || | || ||||| |||| | || || | Sbjct 17582 TTATTCTATATTTACATATATGATAGCACAAG-TATGTAACTTACAACCAGCTGAATTTA 17640 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 | ||| | |||| |||| ||| |||| |||||||| || |||||| | ||| Sbjct 17641 TACATGTATTGGGTAATGCTCATGTTTATAATAATCATATTGAAAGCTTAAAAATTCAGT 17700 Query 19210 TAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAA 19244 || | || | || | ||||| ||| |||||| Sbjct 17701 TAAATAGAACTCCTTATCCTTTCCCTACTCTTAAA 17735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399476310252915