Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq362 206 2e-48 >seq362 Length=22319 Score = 206 bits (228), Expect = 2e-48 Identities = 444/657 (68%), Gaps = 14/657 (2%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCAT-CAAT 101691 ||| |||| || || || || |||||||| | ||||| ||||| | ||| | |||| Sbjct 17737 AATTTAAGAGTAGGGAAAGGATAAGGAGTTCTATTTAACTGAATTTTTA-AGCTTTCAAT 17679 Query 101692 GTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT 101751 |||| ||| | ||||||| || | ||| ||||| || | || || || Sbjct 17678 ATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGGTTGTAAGTT 17619 Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | || || || ||||| | || || | |||||| ||||||||||||||| ||||| Sbjct 17618 ACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGAACTCC 17559 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || || | |||| ||||||||||||| ||| || | ||||||||| | ||||| Sbjct 17558 TAGTCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 17499 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||||| ||| | |||||| || || || |||||||| | ||| |||||||| Sbjct 17498 AAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCA 17439 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||||| | | || | |||| |||||| | |||| || || || | | ||| Sbjct 17438 TGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATATTTTT 17379 Query 101992 TAATTGGTCAACTCCTTCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCC 102048 || ||| ||||| |||| ||||||| ||| || | | || ||||||| || || Sbjct 17378 TAGTTGATCAACACCTTTATCTTTATAATTATCATGC---ATATCTGTATATTCAGCACC 17322 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---TCCTTCATCTCTGTCATA 102105 ||||| ||||| || |||||||| | ||| |||||||| |||| ||| || ||| Sbjct 17321 AAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTAACTTC-TCTATGAAATA 17263 Query 102106 AAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGC 102165 | | | |||||||||||| ||| | |||||| || ||||| || || Sbjct 17262 ATTTTCTA--TTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATTTTT 17205 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | || | | || | | || |||||| |||||||| || | |||||||| || Sbjct 17204 TTCTAACAATGTATTTCCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTCAATAAT 17145 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAA 102282 ||||| | ||||| | | || || ||||| | |||||| | | | |||| |||| Sbjct 17144 ACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAAATATTGATTTAAATTAAA 17088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361226161566437