Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8 434 1e-116 seq89 203 4e-47 >seq8 Length=6382 Score = 434 bits (480), Expect = 1e-116 Identities = 1124/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Plus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 3327 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 3386 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGA 53064 |||| ||||||||| || || |||| ||| | |||| | | ||| || | | Sbjct 3387 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 3445 Query 53065 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 |||| | | || ||| | | || || || |||| ||| | ||| || | Sbjct 3446 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 3504 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 3505 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 3564 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 3565 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 3624 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 53303 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 3625 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 3684 Query 53304 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 53360 ||| ||||||| |||| | ||| || ||||| Sbjct 3685 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 3744 Query 53361 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 3745 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 3803 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 53479 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 3804 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 3863 Query 53480 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 3864 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 3921 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 3922 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 3981 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCT 53657 | |||||||| | || |||||||||| | ||||| ||| | ||| | ||| | Sbjct 3982 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 4041 Query 53658 TCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAG 53711 | ||| ||||||||| || | ||||| ||||| || |||||||| | Sbjct 4042 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 4101 Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 4102 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 4161 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 4162 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 4221 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 |||| | || |||| ||||||||| || || || || ||| || ||| | Sbjct 4222 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 4281 Query 53892 CACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 4282 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 4338 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 4339 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 4397 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 4398 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 4457 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 4458 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 4517 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||||||||||||||| ||||| | |||| | | | || | ||| ||| Sbjct 4518 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 4577 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 4578 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 4637 Query 54248 GATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 ||| |||||| || || |||| || | | | | | |||| | | | Sbjct 4638 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 4696 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 4697 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 4756 Query 54367 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 4757 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 4815 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 4816 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 4875 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 4876 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 4935 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 || || || | ||||| || || ||||| ||| | || || ||| |||| || | Sbjct 4936 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 4995 Query 54606 TTTTAAAACCAAAATA 54621 |||| || |||||||| Sbjct 4996 TTTTGAATCCAAAATA 5011 >seq89 Length=9661 Score = 203 bits (224), Expect = 4e-47 Identities = 374/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||| |||||| || |||||||||||||| || ||| || | || | | | Sbjct 1367 TGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1308 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 | ||||||| |||||| || | ||| |||| ||| || ||||||||||| Sbjct 1307 TGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACAT 1248 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 24329 ||| || | || ||||||| || || | |||| |||||| || |||||| Sbjct 1247 GCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATTTATCCATTTAGCAGCCCAT 1188 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 || || ||||| | | || || | || ||||||| ||| | || | |||| Sbjct 1187 AATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCT 1128 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 || |||||||| ||| ||||||| || | |||||| |||| ||||| || |||||| Sbjct 1127 TTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCA 1068 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 | || |||||||| || || | | || || |||| | ||||||| | ||||| Sbjct 1067 ACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAAAT 1008 Query 24510 CGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 | || || |||||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 1007 T-TACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATG 949 Query 24569 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 24628 ||||||||||| |||||| | ||| ||| | |||| || | ||| | |||| Sbjct 948 TTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGATAA 889 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||| | |||||| ||||||||||||| || || || ||||| || | |||||| | || Sbjct 888 ATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTC 829 Query 24689 ATGATA 24694 | |||| Sbjct 828 AGGATA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593679393815760