Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq214 102 7e-17 >seq214 Length=8422 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | |||||||| || || |||||||| || || ||||| | Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| ||||||||||| | || |||||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 6806 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || ||||| || |||||||| |||||| | || ||||| | ||||| | Sbjct 6805 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTAT--CTGATTATA 6748 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||| ||||| ||| | || | || ||| ||||| ||||||| Sbjct 6747 ATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||||||||| | || |||||||||||| | || ||||| || ||| Sbjct 7297 AAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 7238 Query 25179 CAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 ||||| |||||| | || ||||| | ||||| ||||||||||| ||||| ||| | | Sbjct 7237 CAATTAGAAGATGGTAGAACACTAT--CTGATTATAATATTCAAAAAGAATCAACTTTAC 7180 Query 25237 ACATGGTGTTACGATTACGAGGAGG 25261 | | || ||| ||||| ||||||| Sbjct 7179 ATTTAGTTTTAAGATTAAGAGGAGG 7155 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | |||||||| || || |||||||| || || ||||| | Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| |||||||| || | || || ||| Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 7034 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || ||||| || |||||||| |||||| | || ||||| | ||||| | Sbjct 7033 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTAT--CTGATTATA 6976 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||| ||||| ||| | || | || ||| ||||| ||||||| Sbjct 6975 ATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410768327545418