Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq362 212 4e-50 >seq362 Length=22319 Score = 212 bits (234), Expect = 4e-50 Identities = 397/581 (68%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| ||||||| || || || |||||||| | || | Sbjct 17683 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGGTTGT 17624 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || | | || || || |||||| | || |||| |||||| |||||||||||| || Sbjct 17623 AAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGA 17564 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||||||| | |||| ||||||||||| | ||| || | ||||||||| | Sbjct 17563 ACTCCTAGTCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAA 17504 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || || |||||||| | |||| ||| Sbjct 17503 ACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACA 17444 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||| | | |||| |||| || || | | | || ||| || || Sbjct 17443 TTCCATGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATA 17384 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | |||| ||||||||| |||| | |||||| | | | | || |||||| || Sbjct 17383 TTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATATCTGTATATTCAGCA 17324 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 |||||||| ||||||||||||||||||| ||| ||||| || ||||||||| | | Sbjct 17323 CCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTAACTTCTCTATGAAAT 17264 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT 97530 || ||||||||| | || | |||||| || ||||| || ||| | Sbjct 17263 AATTTTCTATTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATTTTTT 17204 Query 97531 GCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAAC 97589 || ||| | ||| | | || |||||| |||||||| || |||||||| | || Sbjct 17203 TCTAACAATGTATTT-CCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTCAATAAT 17145 Query 97590 ACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 ||||| | ||||| | | || |||||||| | ||||||| Sbjct 17144 ACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAAAT 17104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346759964292590