Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq362 334 1e-86 seq214 203 5e-47 seq5639 181 2e-40 seq5452 102 1e-16 >seq362 Length=22319 Score = 334 bits (370), Expect = 1e-86 Identities = 561/794 (71%), Gaps = 23/794 (3%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTAT 205417 ||| || ||||||| | | |||||||||| ||| | ||| |||||||| |||| || Sbjct 17702 TAACTGAATTTTTAAGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATAC-AT 17644 Query 205418 GAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTAT 205477 | ||||||||| ||||| ||| ||| || ||||| |||||||| || |||| | || Sbjct 17643 GTATAAATTCAGCTGGTTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAAT 17584 Query 205478 AACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGAC 205537 || ||||| |||||||| || |||| || | |||| |||||||||||||| || Sbjct 17583 AAGAAGCAATGTTAAATGGAACTCCTAGTCCTAAATCACAAGATCTTTGATACATAATAC 17524 Query 205538 ATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATA 205596 ||| | |||| || || |||| |||||| ||| || | |||||| || |||| Sbjct 17523 ATGATA---ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACATGGAGGTAAT 17468 Query 205597 ACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGt 205656 |||| || || | |||| | |||||| || ||| || || |||| || ||| Sbjct 17467 GCCATTTTATCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTAGGA 17408 Query 205657 ttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTT 205716 | |||||| ||| ||||||||||| | ||| |||||||| |||| || | ||||||| Sbjct 17407 TCATTTTTAATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCTTTATAATTA 17348 Query 205717 GTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCT 205776 || |||||| |||||| |||||||||||| | |||||| || ||||||| ||||| Sbjct 17347 TCATGCATATCTGTATATTCAGCACCAAAATGTCTCCATTGGAATCCATAAATAGGACCA 17288 Query 205777 AAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattt 205836 | |||| ||| ||||| | || | || | || | ||| | || |||||| Sbjct 17287 AGATCATTAACTTCTCTATGAAATAATTTTCTATTATCTAAAAATTCTCTTGTTCCATTA 17228 Query 205837 tcatcccaaatatggattcctttattttttaGAA--TATTTGTATTAGTTGATCCAGATA 205894 | |||| |||| | | ||| ||| | | || ||||| ||| ||| ||| || Sbjct 17227 GCTTCCC--ATATTCTTACATTTTTTTCTAACAATGTATTTCCATTTGTTTCTCCTCTTA 17170 Query 205895 TAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATG 205954 ||||||||||||||||||||| ||| |||| | ||| | | ||||||||| ||||||| Sbjct 17169 TAAACCATAATAATTCTTCAATAATACCTCGCACAAATAATTTTTTTGTTGTTAATAATG 17110 Query 205955 GAAATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACAC 206014 |||| | | || ||| ||| ||||||| | | ||| || | || | | |||| Sbjct 17109 GAAAATATTGATTTAAATTAAATTTCATCATATATCCAAATTTACTTAACACACCAACAC 17050 Query 206015 CTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATA 206072 ||||||||| | ||| |||| |||||| || ||| || ||||| |||||||| Sbjct 17049 CTGTTCTATCATCTTGTTTAT--TTCCATGCATTATTATATCATATATAATATTTAAATA 16992 Query 206073 TTGATATTCATCTGATGA-TGTGAT-TTCCattataatata-attttaattttat--ata 206127 |||||||||| ||||| | | || || || || |||| ||||||| |||| | | Sbjct 16991 TTGATATTCA--GGATGATTTTTATATTTTATGCTATTATATATTTTAAAATTATGAACA 16934 Query 206128 t-ttaataattttt 206140 | || | ||||||| Sbjct 16933 TGTTCAGAATTTTT 16920 >seq214 Length=8422 Score = 203 bits (224), Expect = 5e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||||||||| || || ||||||||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 6806 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || ||||||||| Sbjct 6805 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6746 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||||||| ||||| |||||| | ||| |||| ||||| Sbjct 6745 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 6696 Score = 190 bits (210), Expect = 3e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| ||||||||||| || || || ||||| ||| Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 7034 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || ||||||||| Sbjct 7033 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 6974 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||||||| ||||| |||||| | ||| |||| ||||| Sbjct 6973 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 6924 Score = 190 bits (210), Expect = 3e-43 Identities = 165/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| |||||||||||| | || | || || |||||| ||| ||| | ||| | Sbjct 7356 CAGGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTA 7297 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 ||||||||||||||||||| || || |||||||||||||| | |||||||| || |||| Sbjct 7296 AAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAAC 7237 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| || ||||| || ||||||||||||||||||||||||||||| |||| Sbjct 7236 AATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATT 7177 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 7176 TAGTTTTAAGATTAAGAGGAGGTAT 7152 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || || ||||||||| | || | ||| || Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||||||||| || || ||||| ||| Sbjct 6637 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 6578 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || || ||||| Sbjct 6577 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 6518 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||||||||||| || ||| | |||||| | ||| |||| ||| Sbjct 6517 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 6470 >seq5639 Length=3794 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1051 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 992 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| |||||||||||||||||||| || || |||||||| Sbjct 991 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCA 932 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||| ||||| ||| | |||||||| || ||||| Sbjct 931 ACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTATAA 872 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||||| ||||| || |||||||| Sbjct 871 TATTCAAAAAGAGTCAACCTTACATTTGGT 842 >seq5452 Length=16040 Score = 102 bits (112), Expect = 1e-16 Identities = 295/456 (65%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 |||||| ||| |||| | | ||||| ||||| |||| | | |||| ||| ||| Sbjct 13557 TATTTTGACATATATAAGTTTATGTCAAAATTACGCTTACAACTATTATAATCCATGTAT 13498 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | |||||| ||||| | |||||||| ||| ||| || Sbjct 13497 CGAATTTTCCCAAAAACACTTCTTTCATTCCAACTTTGATCATGAACACCCATAATAGAT 13438 Query 202859 CACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAA 202918 |||| ||||||| |||| | |||||| ||| || ||| || |||| Sbjct 13437 GACATGATGGAAACATATGCATTAGCTGTTTTTCCATCAATAGAAAATTCATTGGTTAAT 13378 Query 202919 TNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTT-TGTCCATTCTAATAtttttttAGC 202977 | |||||| |||| | ||| || ||| | | |||||||| || Sbjct 13377 TTAATTGCGCATTTTAATGCTG-TTCTAGAATTTTCTGACCAGTTCAGAATTTTTTTTGC 13319 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 |||||||||||||||| || | || ||| |||| | | || | |||| ||| | Sbjct 13318 CCAATACATTCTTAAAAATTCGTGAATTGTACCTTCATTTATTAATTGTAATTGGCAACA 13259 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097 |||||| | | | ||| || |||||| || | | || ||||| ||| || Sbjct 13258 ATTCCAAATGTCATTATGTGTCCTAGCATTTCGAAAATCTTCGTAATCATATAAATGATT 13199 Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157 ||| | || || |||| |||| | | | ||||||||| || || || || | Sbjct 13198 TCTTTTGTCTAATTCGTGTTTTTTTAAACTCTCTTTTGCCCAATCTTTGGCCCCGTTAAA 13139 Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 |||||| ||||||| |||||| |||||||||| || Sbjct 13138 ATTATCATAATTTTTATTATAGAAACAAAAATTGTC 13103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755402296521600