Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq214 158 2e-33 seq5639 156 6e-33 >seq214 Length=8422 Score = 158 bits (174), Expect = 2e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 7155 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 7214 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| |||||| Sbjct 7215 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 7274 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 7275 ATTCCTTCTTTATCTTG 7291 Score = 156 bits (172), Expect = 6e-33 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 6699 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 6758 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 6759 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 6818 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| || |||||| Sbjct 6819 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 6878 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 6879 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 152 bits (168), Expect = 8e-32 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 6927 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 6986 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| || || |||||| Sbjct 6987 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 7046 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||||||||| |||||| || |||||| Sbjct 7047 ATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 7106 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 7107 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || | |||||| || |||||||| || ||||| || || Sbjct 6471 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 6530 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| || || |||||| Sbjct 6531 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 6590 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 6591 ATTCCTTCTTTATCTTG 6607 >seq5639 Length=3794 Score = 156 bits (172), Expect = 6e-33 Identities = 180/249 (72%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || || ||||| |||||||| || || | ||||||| ||| Sbjct 838 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 897 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 898 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 957 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||| || || ||| || || || |||||||| Sbjct 958 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1017 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT----ATTAGAAAAATATTTGTTaa 146300 ||| || ||||||||||| | || ||||||||||| | || ||||||| | | | Sbjct 1018 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT--ATGA 1075 Query 146301 aaaaaaTAA 146309 ||||||||| Sbjct 1076 AAAAAATAA 1084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743473544567040