Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq89 271 7e-68 >seq89 Length=9661 Score = 271 bits (300), Expect = 7e-68 Identities = 617/913 (68%), Gaps = 29/913 (3%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAAC---TGACAT 15942 |||||||||| ||| || |||||| || | |||||| | | | |||||| |||| Sbjct 1731 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGAC-- 1674 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||| || |||||| ||||||||||||||||||||||||| ||| || || Sbjct 1673 -TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1615 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAA 16059 ||||| ||| ||||| ||||| ||| | | |||| ||||| || ||| || Sbjct 1614 ATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAA 1555 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||||||||| || |||||||| ||||| || ||| | | |||||||| || Sbjct 1554 ---TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAAT 1498 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 1497 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1438 Query 16180 TATATCTCTTACTACACTATTT---AACGGAGGGTTTAATAAGTGTTTAAACATTATACA 16236 ||||| | || ||| | | | || | | |||||| || | |||| ||| Sbjct 1437 TATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAACA 1381 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||| ||| || || || |||||||| ||||| || || |||||| | ||| Sbjct 1380 GTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 1321 Query 16297 -TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 || ||| | | ||||||||| |||||| || || ||| ||| ||| |||| Sbjct 1320 ATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATA 1262 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 | ||||| || ||| || || | || || | | | |||| || | || Sbjct 1261 TTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGA---ATTTGTATCATTTA 1205 Query 16416 tccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTA 16474 ||||||| |||||| |||||| | ||| | | | | | || || || || |||| | Sbjct 1204 TCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGT-ATATTTTCAATAGCATGA 1146 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 ||||||| | ||||||| |||| ||||||| |||| |||| ||||||||| || Sbjct 1145 AATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 1086 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||||| ||||| || | ||||| |||||| |||||| | | ||||| ||| Sbjct 1085 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATT 1026 Query 16595 TGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 | |||||| ||||| || || || || ||||| || |||||||| || ||||| Sbjct 1025 TCTACTTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGC 967 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT-ATCTGAAAGTTTTAACCAGT 16712 |||||| || | | ||||| ||||||| |||||| || | | || |||| | | | Sbjct 966 AAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCA-AAAT 908 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | ||||| | |||||||| | ||||| | |||||||| ||||| |||| |||| Sbjct 907 CTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTT 848 Query 16773 TATACATTTTCCA 16785 | || | ||||| Sbjct 847 TGTAAAAATTCCA 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479121178200