Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq362 226 2e-54 >seq362 Length=22319 Score = 226 bits (250), Expect = 2e-54 Identities = 416/603 (69%), Gaps = 10/603 (2%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| |||||||| || ||| ||||| | ||| || ||||||| ||||||||| Sbjct 17106 TTTCCATTATTAACAACAAAAAAATTATTTGTGCGAGGTATTATTGAAGAATTATTATGG 17165 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGT-AGAAAAAGGAGTTAAGATTTGGAG 20162 ||||| | |||| ||||||| | | |||| ||||||| || | || ||| Sbjct 17166 TTTATAAGAGGAGAAACAAATGGAAAT-ACATTGTTAGAAAAAAATGTAAGAATATGGGA 17224 Query 20163 CGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGGG 20219 || ||||| | | |||||||| | | | || |||| | | | ||| Sbjct 17225 AGCTAATGGAACAAGAGAATTTTTAGATAATAGAAAATTATTTCATA---GAGAAGTTAA 17281 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 ||| | |||||| | |||||||| ||||||||||||||||| ||||||||| || || Sbjct 17282 TGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATACAGATAT 17341 Query 20280 GAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT-A 20338 | | |||||| | |||| || |||||| || ||||| |||| ||||||||| | Sbjct 17342 GCATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAA 17401 Query 20339 AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398 ||| || || | | | ||| ||||||||||||| || ||||| | |||||| | | Sbjct 17402 AAATGATCCTACATG-TAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATA 17460 Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGT 20458 |||||| || |||||||||||||| |||| |||||||| ||| | || |||| | Sbjct 17461 AAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTAT 17520 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | ||| ||||||||| |||| |||| | ||||| || ||||| || || ||||| Sbjct 17521 CATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAGGAGTTCCATTTAACATTGCTT 17580 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAG 20578 |||| | | |||| |||||||| ||||| || | ||| || | | ||| || Sbjct 17581 CTTATTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAACCAGCTGAATTTA 17640 Query 20579 TCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGT 20638 | || | || | || ||| |||| ||||||||| ||| |||||| | |||| Sbjct 17641 TACATGTATTGGGTAATGCTCATGTTTATAATAATCATATTGAAAGCTTAAAAATTCAGT 17700 Query 20639 TAA 20641 ||| Sbjct 17701 TAA 17703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399156332432215