Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq89 248 8e-61 >seq89 Length=9661 Score = 248 bits (274), Expect = 8e-61 Identities = 606/903 (67%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| || ||| ||||| || | || | | | | || ||||| || ||| Sbjct 1730 TAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1671 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 1670 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1611 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || ||| || || ||| | || ||| |||||| ||| |||| |||||||| Sbjct 1610 ATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATA-- 1553 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 ||||||| |||| || ||||||||||||||||| | ||||||| || |||| Sbjct 1552 -ATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1494 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||| | | ||| || |||| | |||||| || || || || | || Sbjct 1493 TCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1435 Query 14152 AATCGTAATAATTTCATTAGAAGG-AGGATATTTTAGATGTT--TAAAAATTAAACACGC 14208 | | || || |||| || | |||||| | || |||||||||| Sbjct 1434 ATTTTGAACAA---CATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTT 1378 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TG 14267 ||||||| ||| | |||||||| |||||||| | ||| || ||||||||| || || Sbjct 1377 AAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATG 1318 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 || || | ||||||| |||||||| |||||| || ||| ||| ||||||| Sbjct 1317 TAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1259 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | || || ||| |||| | || |||| |||| || | | | || ||||| Sbjct 1258 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATT---TATCC 1202 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||| ||||||| | ||| ||||| ||| || |||||||||||| ||||| Sbjct 1201 ATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA 1142 Query 14448 AATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 ||| | || |||| ||| | ||| ||| || ||||||| | ||| ||||| |||| Sbjct 1141 AATTTAATCTTTCTTTTTCAT-CTT-TAATATAATTATCAATTAATAAACTATATGTTTC 1084 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| ||||| ||||| | |||||| |||||| |||||| | | ||||| || Sbjct 1083 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1024 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 ||| ||| ||||| | ||||||||||| || || |||||||| |||||||| Sbjct 1023 TACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 964 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTTTTCCAATC 14682 |||||| || | | ||| |||| | || | ||||||| | | ||||| |||| Sbjct 963 AAATGCTAAAACATGTTTTATAA---AATGTTTTTCATTGACATTTAATTTTTCAAAATC 907 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| Sbjct 906 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 847 Query 14743 ATA 14745 || Sbjct 846 GTA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482311311257160