Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq362 143 4e-29 seq1952 91.5 2e-13 >seq362 Length=22319 Score = 143 bits (158), Expect = 4e-29 Identities = 392/595 (66%), Gaps = 34/595 (6%) Strand=Plus/Plus Query 104167 GACGATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTA 104226 || ||||||||||| |||| || | ||||||| | | |||||||||||| Sbjct 17037 GATGATAGAACAGGTGTTGGTGTGTTAAGTAAATTTGGATATATGATGAAATTTAATTTA 17096 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAA 104286 | || |||||| ||| |||| ||||||||| | ||| | ||| || | |||||| Sbjct 17097 AATCAATATTTTCCATTATTAACAACAAAAAAATTATTTGTGCGAGGTATTATTGAAGAA 17156 Query 104287 CTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAA 104346 | ||||||||||| || || ||| ||| | ||| ||||| || | | Sbjct 17157 TTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAAAAAAATGTAAGA 17216 Query 104347 ATTTGGAATAAAAATGCA------GAATCGTTTTATACACAACAAAATCTTTT--Taaaa 104398 || ||| | |||| | |||| ||||| | | | ||||| ||| || | Sbjct 17217 ATATGGGAAGCTAATGGAACAAGAGAAT--TTTTAGATAATAGAAAATTATTTCATAGAG 17274 Query 104399 aa---aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATA 104455 || |||||| | || ||||||||||| || || |||||||||| ||||| | |||| Sbjct 17275 AAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATA 17334 Query 104456 TTGGG-TGC--GATAAT---AAATATGGTGGTATAGATCAACTCAAAAATATTATTACAA 104509 | ||| |||||| ||| || ||| | |||||||| ||||||||||| | Sbjct 17335 CAGATATGCATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATT 17394 Query 104510 CAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATA 104569 |||| ||||||| ||| |||| |||| || |||| || ||||| ||| ||| Sbjct 17395 TAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 17454 Query 104570 ATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAA 104629 |||||||||| | ||||| |||||| | || || ||| |||| || Sbjct 17455 TAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGT---TT------ 17505 Query 104630 TAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGG 104689 | ||| || |||| || ||| | | | |||||||||| ||| | || | | Sbjct 17506 TTGATG------GAAAATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAG 17559 Query 104690 GAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||||||| |||||||| || |||| | |||| ||| |||| ||||| || || Sbjct 17560 GAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCACAAGT 17614 >seq1952 Length=27227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||||||||| || | | ||||||||||| |||||||| || || ||| || Sbjct 5511 ATGGAGATATTGTATTATTTAATAGACAACCCTCTTTACATCGTATGTCTATTATGTGTC 5452 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || || | |||||||| ||||| ||| |||||| || || || | Sbjct 5451 ATAAAGCTAGAGTTATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTG---TAGCC 5395 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 | ||||||||||||||||||||||||||||||||| |||| |||||| | |||||| Sbjct 5394 CTTATAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAAT 5335 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 5334 CTAGAGCAGA 5325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679766073693840