Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5639 122 7e-23 seq214 111 1e-19 >seq5639 Length=3794 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||| ||||||||||| || ||||| | | |||| | | |||||| Sbjct 841 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 900 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || ||||| || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 901 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 960 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||||||| || || |||| ||||| ||| Sbjct 961 AATTT-TAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1019 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| |||||||||||||| ||||||||||| Sbjct 1020 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1053 >seq214 Length=8422 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 6729 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 6788 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 6789 GCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTT-TAGCTTT 6847 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 6848 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 6907 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 6908 TTTTACAAAAATCTGCAT 6925 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||||||||| ||||| | | |||| ||| |||||| |||||||| || Sbjct 6501 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 6560 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | ||||| ||||| ||||| | || || Sbjct 6561 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTT-TAGCTTT 6619 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || || | || || || ||||| Sbjct 6620 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGT 6679 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 6680 TTTTACAAAAATCTGCAT 6697 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 6957 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 7016 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | || || ||||| |||| | || || Sbjct 7017 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTT-TAGCTTT 7075 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 7076 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 7135 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 7136 TTTTACAAAAATCTGCAT 7153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 7185 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 7244 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 7245 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTT-TAGCTTT 7303 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTC 18274 || | | ||| ||| ||| ||||| Sbjct 7304 AACATTTTCAATAGTATCAGATGGCTC 7330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379317707548815