Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq2086 850 0.0 seq2157 489 5e-134 seq4501 140 1e-28 >seq2086 Length=6755 Score = 850 bits (942), Expect = 0.0 Identities = 1005/1341 (75%), Gaps = 43/1341 (3%) Strand=Plus/Minus Query 33315 CTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCG 33374 ||||| ||| ||||| |||||||||| |||||| |||||| | || | || || Sbjct 1980 CTGAATCGCCCCGGGTTCTGTGGAGGCTGTATGGTTTGAGTTAA-GTGGTTTC--CA-CG 1925 Query 33375 GCATTTCTG------AGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAG 33428 | ||||| || | | ||||||||||||||||| | | || |||| |||| Sbjct 1924 G---TTCTGTCGACGAGCCGACGATAGTAGTTTGCCTCAGCCCCGACCGGAGGGACATAG 1868 Query 33429 CCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGT 33488 |||| | ||||| ||| || || | |||| ||||||| |||||||||| || || ||| Sbjct 1867 CCGATGGATTCCAGCAGGCGGTGGTTGTTGAACCAGGCTACCCATTCCAAGGTGGCGAGT 1808 Query 33489 TCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGG 33548 ||||||| |||| | ||||| || || || || || ||| | || |||||||||| | Sbjct 1807 TCGACGGCCTCCCGGCTCTTCCAGGGTGCTCGGCGGTGGATCGGCTCGGTCTTGTACAAG 1748 Query 33549 CCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGC 33608 |||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||| |||||| Sbjct 1747 CCGTTGATGGTTTCGGCCAGGGCGTTGTCATAGCTGTCGCCACGGCTTCCGACGGAGGGC 1688 Query 33609 TCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTG 33668 ||||| |||||||| ||||| || ||| ||||| ||| |||||| || || || | | Sbjct 1687 TCGATCCCGGCCTCGGCCAGGCGCTCGGCATAGCGGATGGAGACGTACTGCGAGCCTCGG 1628 Query 33669 TCGGAATGATGAATCAAAGTCCCGTCCTCGC---CCGGTTGGCGGGCGTACAGCGCTTGT 33725 ||| || |||| || | | || || ||||||| ||||||||||| || || Sbjct 1627 TCGCTGTGGTGAACCAGGG---CATCGGTGCGTTCCGGTTGCCGGGCGTACAGGGCCTGC 1571 Query 33726 TCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATA 33785 || ||||| ||||| || ||||| || |||||| |||||||||||||| ||||| Sbjct 1570 TCCAGTGCGTCCAGGACGAAGTCGGTCCGCATCGAATGACTGACCCGCCAGCCCACAATG 1511 Query 33786 CGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACA 33845 || ||||| |||||||| |||||||| ||||| |||| |||||| ||||| |||||||| Sbjct 1510 CGCCGGGCAAACACGTCAATCACGAAGGCCACATACAACCAGCCCTGCCAGGTCGAGACG 1451 Query 33846 TACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACT 33905 || || || ||||||||||| |||||||| || || || ||||||| |||| |||||| Sbjct 1450 TAGGTGAAGTCCGACACCCACAGCTGATTGGGACGATCCACCTTGAATTGCCAGTTGACC 1391 Query 33906 CGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGA 33965 || |||||||||| ||| ||| |||| | ||| ||||| || ||| || || Sbjct 1390 CGATCCAGCGGGCACGGGACGGCGTGGTCGGGCACCGTGGTGCGCACCACCTTGCCACG- 1332 Query 33966 ACTGCGCCACG--CAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCG 34023 | || | || || ||| | ||||||||| || |||||||||| || || ||| Sbjct 1331 -CCGCACACCGGCCAGCCCCAACCGCTTCATCAGGCGCTCGACCGTGCAACGGGCGACCT 1273 Query 34024 TAATGCCTTCCCGGTTCATCTGCTTCCAGACCTT--CGGCACGCCGTAGACCTGCATGTT 34081 || ||||| ||||||| | | ||||||||| |||| ||| || ||||||||||| Sbjct 1272 GGATACCTTCGCGGTTCAACGGGCGCCAGACCTTGTCGGC--GCCATACACCTGCATGTT 1215 Query 34082 GGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTT----CGCGCGGG 34137 ||| |||||||| |||| || || || || || | ||||||| | |||||||| Sbjct 1214 GGCGTGCCAGACCCGCTGAATTTCTGGCATCAGAACCGCATCGCGCTGGGCACGCGCGGG 1155 Query 34138 C-GCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCA 34196 |||| || || ||||| | || || |||||||| | || || ||||||||| Sbjct 1154 AAGCAGG----CGGGGG-TCGCGCTGCTGCGCCGCATGGCGCCAATACCCGGACGGGGCA 1100 Query 34197 ATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAG 34256 ||||||||||||||||||||||||||||||||| | | || || ||| | || |||||| Sbjct 1099 ATCCGCAAGACCTTGCAGATCGGCTCGACCCCGTGGCTATCCCGGTGCCGGTCGATGAAG 1040 Query 34257 GCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTT 34316 | |||||||| || |||||||||||||||||||| |||||||||||||||||||| | Sbjct 1039 TCAGTCAGGACTCGAGCCGGCGGTCGAGCTCCGCCTGGGCGAAAAACGCGCTCGCCAGCT 980 Query 34317 TGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTT 34376 | || |||||||||| | |||||| ||||||||||||||||||| ||| | || ||||| Sbjct 979 TCAGTATCTCGTTGGCCTTGCGCAGCTCCTTGACCTCGCGCTCCAGGGCCTCGAGGCGTT 920 Query 34377 CACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGT-TGCGCTTAACC 34435 | || ||| | || |||||||| |||| || |||| ||| | | || | ||| Sbjct 919 CGCGTTCGTCGGTCGTCACGCCAGSGCGCAGACCGGCATCGATCTCATGCGTGCGT-ACC 861 Query 34436 CAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCC 34495 || ||| || | | || ||||||||| |||| ||||| || |||| ||||||| Sbjct 860 CAGGTATGCAGGGTGTTGGCCGAACAGCCGATCTTCGGGGCAATGGACTCGATGGCCGCC 801 Query 34496 CACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACT 34555 |||| ||| || | ||||| ||| ||||| | |||| ||| || || || || |||||| Sbjct 800 CACAGCGAGGGATACTCGCCACGGTGCTC-TGCACCATGCGGACGGCCCGTTCACGGACT 742 Query 34556 TCCGGGGAAAACTGCTTGGCTTCTGTTCATGGCTCCATTCTCTC-AGAGTTGGAGCCTCC 34614 || |||||| ||| ||||||| || |||||||| ||||||||| ||||| ||||||| Sbjct 741 TCGGGGGAATACTTGTTGGCTT-TGCTCATGGCTTCATTCTCTCTAGAGTCAAAGCCTCC 683 Query 34615 AC-AAACTCGGGGCGGTTCAG 34634 | |||| ||||||| ||||| Sbjct 682 TCAAAACCCGGGGCGATTCAG 662 >seq2157 Length=2836 Score = 489 bits (542), Expect = 5e-134 Identities = 619/830 (75%), Gaps = 27/830 (3%) Strand=Plus/Minus Query 33821 CAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAG-AGCTGATTCGGTC 33879 || |||||| ||||| |||||||| || || || ||||||||||| |||||||| || | Sbjct 2832 CACCCAGCCCTGCCAGGTCGAGACGTAGGTGAAGTCCGACACCCAACAGCTGATTGGGAC 2773 Query 33880 GGTCAG-CCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTA 33938 | || || |||| |||| |||||| || |||||||||| ||| ||| |||| Sbjct 2772 GATCCCACCCTGAA-TGCCAGTTGACCCGATCCAGCGGGCACGGGACGGCGTGGTCGGGC 2714 Query 33939 ATCGTCGTGCGAAC-ACGCTTACCGCGAACTGCGCCACGCAAGCCCTG-CAGCTTCATCA 33996 | ||| ||||| || || ||| || || | || || ||||| | ||||||||| Sbjct 2713 ACCGTGGTGCGCACCACCCTTGCCACGCCGCACACCGGGCCAGCCCCAACCGCTTCATCA 2654 Query 33997 ACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCT 34056 || |||||||||| || || ||| || ||||| ||||||| | | |||||||| Sbjct 2653 GGCGCTCGACCGTGCAACGGGCGACCTGGATACCTTCGCGGTTCAACGGGCGCCAGACCT 2594 Query 34057 T--CGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAA 34114 | |||| ||| || || ||||||||||| |||||||| |||| || || || || Sbjct 2593 TGTCGGC--GCCATACAC-TGCATGTTGGCGTGCCAGACCCGCTGAATTTCTGGCATCAG 2537 Query 34115 AAGCTCATCGCGTTT----CGCGCGGGC-GCAGCGTTTCGACGGATCGCGAAGTTGTGCT 34169 || | ||||||| | |||||||| |||| || || ||||| | || || Sbjct 2536 AACCGCATCGCGCTGGGCACGCGCGGGAAGCAGG----CGGGGG-TCGCGCTGCTGCGCC 2482 Query 34170 GCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCG 34229 |||||||| | || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 2481 GCATGGCGCCAATACCCGGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCG 2422 Query 34230 AAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCG 34289 | | || || ||| | || |||||| | |||||||| || |||||||||||||||| Sbjct 2421 TGGCTATCCCGGTGCCGGTCGATGAAGTCAGTCAGGACTCGAGCCGGCGGTCGAGCTCCG 2362 Query 34290 CCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGA 34349 |||| |||||||||||||||||||| || || |||||||||| | |||||| ||||||| Sbjct 2361 CCTGGGCGAAAAACGCGCTCGCCAGCTTCAGTATCTCGTTGGCCTTGCGCAGCTCCTTGA 2302 Query 34350 CCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCCGTACTCACGCCATCGCGCTCTC 34409 |||||||||||| ||| | || |||||| || ||| | || |||||||| ||||| | Sbjct 2301 CCTCGCGCTCCAGGGCCTCGAGGCGTTCGCGTTCGTCGGTCGTCACGCCAGCGCGCAGAC 2242 Query 34410 CACGGTCGACCTCGT-TGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATC 34468 | |||| ||| | | || | ||||| ||| || | | || ||||||||| Sbjct 2241 CGGCATCGATCTCATGCGTGCGT-ACCCAGGTATGCAGGGTGTTGGCCGAACAGCCGATC 2183 Query 34469 ATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGT 34528 |||| ||||| || |||| ||||||||||| ||| || | ||||| ||| ||||| | Sbjct 2182 TTCGGGGCAATGGACTCGATGGCCGCCCACAGCGAGGGATACTCGCCACGGTGCTCCTGC 2123 Query 34529 ACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAACTGCTTGGCTTCTGTTCATGGC 34588 |||| ||| | || || || |||||||| |||||| ||| ||||||| || ||||||| Sbjct 2122 ACCATGCGGATGGCACGTTCACGGACTTCGGGGGAATACTTGTTGGCTT-TGCTCATGGC 2064 Query 34589 -TCCATTCTCTC-AGAGTTGGAGCCTC--CACAAACTCGGGGCGGTTCAG 34634 || |||||||| ||||| |||||| || |||| ||||||| ||||| Sbjct 2063 TTCAATTCTCTCAAGAGTCAAAGCCTCCTCAAAAACCCGGGGCGATTCAG 2014 >seq4501 Length=1229 Score = 140 bits (154), Expect = 1e-28 Identities = 190/260 (73%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 33315 CTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCG 33374 ||||| ||| ||||| |||||||||| |||||| |||||| | || | || || Sbjct 254 CTGAATCGCCCCGGGTTCTGTGGAGGCTGTATGGTTTGAGTTAA-GTGGTTTC--CA-CG 199 Query 33375 GCATTTCTG------AGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAG 33428 | ||||| || | | ||||||||||||||||| | | || |||| |||| Sbjct 198 G---TTCTGTCGACGAGCCGACGATAGTAGTTTGCCTCAGCCCCGACCGGAGGGACATAG 142 Query 33429 CCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGT 33488 |||| | ||||| ||| || || | |||| ||||||| |||||||||| || || ||| Sbjct 141 CCGATGGATTCCAGCAGGCGGTGGTTGTTGAACCAGGCTACCCATTCCAAGGTGGCGAGT 82 Query 33489 TCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGG 33548 ||||||| |||| | ||||| || || || || || ||| | || |||||||||| | Sbjct 81 TCGACGGCCTCCCGGCTCTTCCAGGGTGCTCGGCGGTGGATCGGCTCGGTCTTGTACAAG 22 Query 33549 CCGTTGATCGTTTCGGCCAG 33568 ||||||| ||||||||||| Sbjct 21 CCGTTGA-GGTTTCGGCCAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170660473986490