Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8 646 0.0 seq89 273 2e-68 >seq8 Length=6382 Score = 646 bits (716), Expect = 0.0 Identities = 1213/1758 (69%), Gaps = 46/1758 (3%) Strand=Plus/Plus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || | || | ||| || ||||| || | |||| ||||| || ||| Sbjct 3327 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 3386 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAA 37053 ||||| |||||||| | || ||||| || | | || | || ||| || ||| | | Sbjct 3387 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 3446 Query 37054 CCATTATGTAACA--CAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 ||||| || | || ||||||| | || || || | || ||| | |||| | | Sbjct 3447 CCATTGTG-AGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 3504 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | |||| || ||||| ||||| || || ||| |||||| | ||| || Sbjct 3505 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 3564 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||| | || |||||||| | || ||||| || || || | Sbjct 3565 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 3624 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| |||||||| || | ||| | |||| Sbjct 3625 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 3684 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| || ||||||||| ||||| Sbjct 3685 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTACATTCCACATATCAAATTGT 3743 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || |||| ||| ||||| | | ||||||| ||||| ||||| | |||| ||| Sbjct 3744 AATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 3803 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | ||| ||| ||| ||||| || |||||||| |||||||| || ||| | ||||| Sbjct 3804 AATTC--AAC-AGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTT 3860 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| || || || Sbjct 3861 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAAT 3920 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || |||| |||| | ||||| ||| | | |||| | | | Sbjct 3921 CCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATT 3980 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 3981 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 4039 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||| | || | ||| Sbjct 4040 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 4099 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || | | |||||| ||||| |||||||| || | || ||| || || || || Sbjct 4100 TGAAGCCAAATTACAAACAGCTACTTCATCAG-GTGATGTATATTCAATTATTTCACAAC 4158 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | |||||| || |||||||||| ||||| ||||||| ||||| |||||| | || Sbjct 4159 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCAT 4218 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || |||||||||| | | ||||| ||||| Sbjct 4219 CTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA 4278 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt------ttttCTTTGTTTCGTATTCTATAT 37930 || ||||| | | || | ||| ||| ||||||| ||| |||| | ||| Sbjct 4279 AA--TCTTG--TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTGTAT 4332 Query 37931 ATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACA 37990 ||||||| | ||| || | ||||| || | ||| ||||||||||| ||||||| Sbjct 4333 ATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACA 4392 Query 37991 TTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATG 38050 |||| | ||| | | || || || ||| | || ||||||||||||||||||||| | | Sbjct 4393 TTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAG 4452 Query 38051 CAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAA 38110 || |||||||||| | | ||| ||||||| || || ||| |||||||| || || Sbjct 4453 CATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAA 4512 Query 38111 AATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTAT 38170 | || || ||||||| ||||||||||||||||| | | | | ||| |||||| Sbjct 4513 ATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTC 4572 Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 | || || |||| | ||||||| |||| | |||| | | ||||||||| || |||| || Sbjct 4573 CTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAAC 4632 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT-C 38289 |||| ||| | || || | || ||||||| | || ||| ||||| ||| | | Sbjct 4633 CATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTTATAT--CTTGTAC 4690 Query 38290 GACAA-TCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAA 38347 ||| |||||| || || || ||||| | |||||||| ||||||||||| || |||| Sbjct 4691 AGCAACTCCTATACCTCCCGC-GGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAA 4749 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 |||||||||| ||| || || || | || || ||| ||| |||||||| || Sbjct 4750 ATATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGAC 4809 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| ||||| | |||||||||||||||| |||||| |||| |||| | |||| Sbjct 4810 GTGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTA 4869 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||| ||||||||||| | | || | |||| | || || || | ||||| |||| Sbjct 4870 AATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCA 4929 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 ||| | ||||||||| | ||| || |||||||| || | | || ||| ||| ||| Sbjct 4930 TTAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTT 4989 Query 38588 CTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTAT 38647 |||||||||| | |||||||||| ||| | ||||||| || ||||| | |||| Sbjct 4990 CTAATGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTTGTATAATCTATTTCTTTAT 5049 Query 38648 CGATTATATCTCTATGTT 38665 | |||| |||||| Sbjct 5050 TTAAACGATCTTTATGTT 5067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| || | ||| | || ||||| | ||||| ||| ||| Sbjct 3004 TCAACTGTAAATTTAATAGCATCCGTTGCTGCTTGAGTTCTTAAGTAATATGCTCCGGTT 3063 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | ||| || |||||||||||||||| | ||||||| ||||||| || Sbjct 3064 TTTAGGCCCTTTTCCCAACCATAAAAATGCATACTGGATAATTTTGCGAATGTAGGCTTT 3123 Query 36910 TCTATATATATTGTCATTGATTG 36932 | ||| || || | | |||||| Sbjct 3124 TGTATGTAAATGTTTAGTGATTG 3146 >seq89 Length=9661 Score = 273 bits (302), Expect = 2e-68 Identities = 631/931 (68%), Gaps = 26/931 (3%) Strand=Plus/Minus Query 11281 TTAAAAATCTATATCCGTAGAAAATA--TATTCTCTTCTTTATTTGTAAACACCCCCATC 11338 ||||||||| ||| |||||||| | |||| |||||| |||||| | Sbjct 1731 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGA--C 1674 Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| | ||| || ||||| || || |||| || ||||| | Sbjct 1673 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1614 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGA-CTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | | ||||| || | || | |||| | |||| ||| ||||| | ||| Sbjct 1613 TCCATCCAATTGAAAGGGTTTT-TAGAATGAAAAACTTTAGAACATCCTAAACATTCTAA 1555 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||||||||| || || ||||| ||||| |||||||| | | ||||||| || || | Sbjct 1554 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1495 Query 11518 ATCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATT 11575 ||| || | || | | |||| || | | |||||| | ||| || || | | | Sbjct 1494 ATCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1437 Query 11576 ATCGACGTT--ATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAAC 11630 || | || | ||| | | | | | || | |||||| || | ||||||| Sbjct 1436 AT--ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAAC 1382 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||||| ||||||||| || || ||||| |||| ||||||| ||||||||| | Sbjct 1381 AGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAAC 1322 Query 11691 CGGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 | | | | || | ||||||| | |||||| || ||| ||| ||| ||| ||| Sbjct 1321 CATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAAT 1263 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATAT 11808 ||||| || ||| |||| ||||| | ||||||| || | | |||| | | ||| Sbjct 1262 ATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATC-ATTTAT 1204 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| ||||| ||||| ||||| | | || |||| ||||| | ||| Sbjct 1203 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1144 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 ||||| | | ||||| | | |||| | | ||| |||| |||||||||||||| |||| Sbjct 1143 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 1084 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 ||||| |||||||| | |||||||||||| ||| || | ||| || | | Sbjct 1083 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1024 Query 11989 TACATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 ||| || | ||||| || | || ||||| || |||||| |||||||| | ||||| Sbjct 1023 TACTTCT-CTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAA 965 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCAT 12107 ||||||||| | |||||||||||| | |||||| | | ||||||| || |||| | Sbjct 964 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTT 905 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 ||||| | |||||||| | ||||||| | |||||||| || | | || ||| | Sbjct 904 TCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 845 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGG 12198 | | ||||| | ||| ||||| ||||||| Sbjct 844 AAAAATTCCAAACTTCAGGATACATAATAGG 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491493743280