Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq89 271 7e-68 >seq89 Length=9661 Score = 271 bits (300), Expect = 7e-68 Identities = 611/903 (68%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| || ||| ||||| || | || | | | | || ||||| || ||| Sbjct 1730 TAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1671 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 1670 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1611 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || ||| || || ||| | || ||| |||||| ||| |||| |||||||| Sbjct 1610 ATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATA-- 1553 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 |||||||||||| ||| ||||||||||||||||| | ||||||| || |||| Sbjct 1552 -ATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1494 Query 13761 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||| | | ||| || |||| | |||||| || || ||||| | || Sbjct 1493 TCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1435 Query 13820 AATTGTAATAATCTCATTAGAAGG-AGGATATTTTAGATGTT--TAAAAATTAAACACGC 13876 | || || || |||| || | |||||| | || |||||||||| Sbjct 1434 ATTTTGAACAA---CATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTT 1378 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TG 13935 ||||||| ||| | |||||||| |||||||| | ||| || ||||||||| || || Sbjct 1377 AAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATG 1318 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 || || | ||||||| |||||||| |||||| ||| || ||| ||||||| Sbjct 1317 TAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1259 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || || ||| |||| | || |||| |||| || | | | || ||||| Sbjct 1258 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATT---TATCC 1202 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| ||||| ||| || |||||||||||| ||||| Sbjct 1201 ATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA 1142 Query 14116 AA--TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 || || || |||| ||| | ||| ||| || ||||||| | ||| ||||| |||| Sbjct 1141 AATTTAATCTTTCTTTTTCAT-CTT-TAATATAATTATCAATTAATAAACTATATGTTTC 1084 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 ||| ||||| ||||| | |||||| |||||| |||||| | | ||||| || Sbjct 1083 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1024 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 |||||| ||||| | ||||||||||| || || |||||||| |||||||| Sbjct 1023 TACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 964 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAATC 14350 |||||| || | | ||| |||| | || | ||||||| || | ||||| |||| Sbjct 963 AAATGCTAAAACATGTTTTATAA---AATGTTTTTCATTGACATTTAATTTTTCAAAATC 907 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| Sbjct 906 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 847 Query 14411 ATA 14413 || Sbjct 846 GTA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479693897335800