Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq4231 309 1e-79 >seq4231 Length=1411 Score = 309 bits (342), Expect = 1e-79 Identities = 477/676 (71%), Gaps = 11/676 (2%) Strand=Plus/Plus Query 66680 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66739 ||||| |||||||||||||| | || |||||| ||| |||||| ||| || | ||| Sbjct 720 GACGTGATTCCCACCGGCTCCCTGGCGCTGGACATCGCGCTGGGCTGCGGCGGTTTGCCG 779 Query 66740 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66799 | || || | || || || ||||| || || || || || ||| | || ||| ||| Sbjct 780 CGTGGTCGCATCGTCGAGATTTACGGGCCGGAGTCCTCGGGCAAGACGACGCTGACTCTG 839 Query 66800 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66859 | | | ||| | ||||||||| |||| ||| || || | | | || || ||||| Sbjct 840 GAGGTCATCGCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCTTTCGTGGATGCCGAGCAT 899 Query 66860 TCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66919 |||||||||| | || ||| || | |||| ||| |||||||| | || ||||| Sbjct 900 GCCCTGGACCCGGTCTATGCCGAGAAGATCGGAGTGAACCTCGACGATCTGCTGGTGTCC 959 Query 66920 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66979 |||||||| || ||||||||||| ||||| |||| ||| | || || || |||| Sbjct 960 CAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCGGACGTGCTGGTGCGTTCCGGCGGC 1019 Query 66980 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 67039 || | |||| || | ||||| |||||||| ||| ||| ||||| ||||||||| Sbjct 1020 GTGGACGTCGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGC 1079 Query 67040 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 67099 || || || || ||| | || ||||| || | || |||||||||||| |||||||| Sbjct 1080 GAGATGGGCGATTCGCACATGGGTCTGCAGGCCAGACTGATGTCGCAGGCCTTGCGCAAG 1139 Query 67100 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 67159 || || | || |||| || ||||||| ||| | ||| |||| ||| | ||| | Sbjct 1140 CTGACCGCCAACATCAAGCGCTCCAACACCCTGGTGATCTTCATCAATCAGATCCGCATG 1199 Query 67160 AAGATCGGCAACGTGGGCTACGGC---CCGAATGAGACCACCACGGGCGGAAAGGCTTTG 67216 |||||||| |||| | |||| ||| ||||||||||| ||||| || || | Sbjct 1200 AAGATCGG---CGTGATGTTCGGCAATCCG---GAGACCACCACCGGCGGTAACGCGCTC 1253 Query 67217 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGA 67275 | |||||||||||| || || |||| |||| || ||| ||| ||| | ||||| Sbjct 1254 AAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCG-TTCGGGGGCGATCAAGAACGGCGA 1312 Query 67276 TGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCA 67335 |||| |||| ||| ||||| || || ||||| ||||||||| |||| |||||| Sbjct 1313 CGAGGTGATCGGGAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTT 1372 Query 67336 CCGCAACGCCGAGTTC 67351 ||||| |||||| ||| Sbjct 1373 CCGCACCGCCGACTTC 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242837567685644