Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq2129 98.7 7e-16 >seq2129 Length=3310 Score = 98.7 bits (108), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| |||||||||||| || | ||||||||| ||||||||||| || ||||||| || Sbjct 365 GTTGGCCTTGATGAGGCCGGTGATCACATCCACCGAGGGCCGCTGGGTGGCCAGGATCAG 424 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT 99506 ||| | || || ||||||||||||||||| | ||| | || |||| ||| || Sbjct 425 ATGCAGCCCCGCGGCACGCGCCTTCTGCGCCAGCCGGGCGATCAGCTCCTCCACC---TT 481 Query 99507 CTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 99566 |||| | |||||| | || || ||||| || | || | |||||| |||| || Sbjct 482 CTTGCCTACGATCATCATCATGTCGGCCAGTTCGTCGATGACGATGACGATGCAGGGCAG 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354618619568982