Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq214 154 1e-32 seq5639 105 5e-18 >seq214 Length=8422 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||| ||| | ||| || |||||||| ||||| || || | Sbjct 6471 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 6530 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | ||||||||| ||| Sbjct 6531 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 6590 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || |||||| |||||| Sbjct 6591 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 6649 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || || || || || | |||||||||||||| |||||| Sbjct 6650 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 6698 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 6699 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 6758 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | |||||| || || Sbjct 6759 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 6818 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || |||||| |||||| Sbjct 6819 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 6877 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || |||||||| || || | |||||||||||||| |||||| Sbjct 6878 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 6926 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 6927 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 6986 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | ||||||||| ||| Sbjct 6987 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 7046 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || ||||| ||| || ||| |||| || |||||| |||||| Sbjct 7047 ATTCCCTCTTTATCTTGGATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 7105 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || |||||||| || || | |||||||||||||| |||||| Sbjct 7106 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 7154 Score = 120 bits (132), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 7155 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 7214 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | |||||| || ||| Sbjct 7215 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 7274 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || ||||| ||||| Sbjct 7275 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCAGATGGCTCTAC 7333 Query 15316 ATCTAAGGTAATGGTTTTACCTG 15338 ||| | || || ||||| |||| Sbjct 7334 ATCAAGAGTTATAGTTTTTCCTG 7356 >seq5639 Length=3794 Score = 105 bits (116), Expect = 5e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| || || || || || |||| | |||||| Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 901 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| ||||| | || || | |||||| || |||||||||||||| || | Sbjct 902 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 961 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || || || ||| ||||| | || || ||||| Sbjct 962 ATTTTAGCT-TTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1020 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA--ATAAAA 15377 || || | ||||||||||| |||||||| || | || |||||| Sbjct 1021 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAA 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154097246467