Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq2086 170 7e-38 seq2157 84.2 8e-12 >seq2086 Length=6755 Score = 170 bits (188), Expect = 7e-38 Identities = 740/1150 (64%), Gaps = 57/1150 (5%) Strand=Plus/Plus Query 52364 TTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGA 52423 |||||||||||||||| | ||||| | || ||||| | | | || || ||| Sbjct 733 TTCCCCCGAAGTCCGTGAACGGGCCGTCCGCATGGTGCAGAGCACCGTGGC-GAGTATCC 791 Query 52424 CTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAGACTCT 52483 ||| | ||||||||| || ||||||||||| ||||| |||||| || | | || || Sbjct 792 CTCGCTGTGGGCGGCCATCGAGTCCATTGCCCCGAAGATCGGCTGTTCGGCCAACACCCT 851 Query 52484 GCGTGTCTGGGTTCGCCAGCATGAGCGGGATACCGGGGGCGGTGATGGAGGGCTCACCAC 52543 || | |||||| ||| ||||||| ||| |||| | ||| | | || || Sbjct 852 GCATACCTGGGTACGCACGCATGAGATCGATGCCGGTCTGCGCSCTGGCGTG---ACGAC 908 Query 52544 CGCTGAACGTCAGCGTCTGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCGCAGTAA 52603 || ||||| | || || | | |||||||| || || |||||| || Sbjct 909 CGACGAACGCGAACGCCTCGAGGCCCTGGAGCGCGAGGTCAAGGAGCTGCGCAAGGCCAA 968 Query 52604 CGATATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCT-CTGGA 52662 ||| || || | ||| ||| | ||| || |||||||| ||||||||| || || Sbjct 969 CGAGATACTGAAGCTGGCGAGCGCGTTTTTCGCCCAGGCGGAGCTCGACCGCCGGCTCGA 1028 Query 52663 AAAAATGA-TGCCACTGC-TGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGC 52720 ||| || ||| | | || || || || ||||||||| ||| | ||| Sbjct 1029 GTCC-TGACTG--ACTTCATCGACCGGCACCGGGATAGCCACGGGGTCGAGCCGATCTGC 1085 Query 52721 AGCGAACTGCATATTGCCCCGTCAACGTATTACCACTGT------CAGCAACAGCGACAT 52774 | | ||| ||||||||||| ||||| | | | ||||| | ||||| Sbjct 1086 AAGGTCTTGCGGATTGCCCCGTCCGGGTATTGGCGCCATGCGGCGCAGCAGC-GCGACCC 1144 Query 52775 CATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGATACAG 52834 | || | | ||| ||||| |||||||||| |||| | ||| || ||| Sbjct 1145 CCGCCTGCTTCCCGCG-----CGTGCCCAGCGCGATGCGGTTCTGATGCCAGAAATTCAG 1199 Query 52835 CGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTA 52894 || || | | | || |||| || || | || |||||||| | |||| Sbjct 1200 CGGGTCTGGCACGCCAACATGCAGGTGTATGGCGCCGACAAGGTCTGGCGCCCGTTGAAC 1259 Query 52895 CGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATG--GCGGTTATGGGAC 52952 || ||||||||| || ||| | ||||| || | || || ||| |||||| ||| | Sbjct 1260 CGCGAAGGTATCCAGGTCGCCCGTTGCACGGTCGAGCGCCTGATGAAGCGGTT--GGGGC 1317 Query 52953 TTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATCAGCCGGA--AAGCCGT--- 53007 | |||||||| | || || || ||| || || || | ||| || | ||||| Sbjct 1318 TGGCCGGTGTGCGGCGTGGCAAGGTGGTGCGCACCACGGT--GCCCGACCACGCCGTCCC 1375 Query 53008 -TGCC-GCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGG 53065 |||| || || | || || ||| | || ||| || || || || | ||||||||| Sbjct 1376 GTGCCCGCTGG--ATCGGGTCAACTGGCAATTCAAGGTGGATCGTCCCAATCAGCTGTGG 1433 Query 53066 GTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATT 53125 ||| | || || || |||||| || |||||||||| | |||||||| ||| | ||| Sbjct 1434 GTGTCGGACTTCACCTACGTCTCGACCTGGCAGGGCTGGTTGTATGTGGCCTTCGTGATT 1493 Query 53126 GATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTC--TCATCGTCCATGGAGA-CGACA 53182 || ||||||||| | ||||||||| ||||||||| |||| || ||| || |||| Sbjct 1494 GACGTGTTTGCCCGGCGCATTGTGGGCTGGCGGGTCAGTCAT--TCGATGCGGACCGAC- 1550 Query 53183 TTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTCCGGCAC------- 53235 ||||| ||||| |||||||||||||| | | ||||| | |||| |||| Sbjct 1551 TTCGTCCTGGACGCACTGGAGCAGGCCCTGTACGCCCGGCAACCGGAACGCACCGATGCC 1610 Query 53236 --GGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTT 53293 ||| || ||||| || ||| || ||||| || || | ||| | |||| || Sbjct 1611 CTGGTTCACCACAGCGACCGAGGCTCGCAGTACGTCTCCATCCGCTATGCCGAGCGCCTG 1670 Query 53294 AAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATG 53353 || ||||| | | | || ||||| |||||| ||||||||||| || Sbjct 1671 GCCGAGGCCGGGATCGAGCCCTCCGTCGGAAGCCGTGGCGACAGCTATGACAACGCCCTG 1730 Query 53354 GCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAG----CTGGAA 53409 || || | |||||| || | ||||| | ||| || ||||| ||| |||||| Sbjct 1731 GCCGAAACCATCAACGGCTTGTACAAGACCGAGCCGATCCACCG-CCGAGCACCCTGGAA 1789 Query 53410 AAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACG 53469 | ||| | | || ||||| ||||| | ||||| | ||||| ||||| | || Sbjct 1790 GAGCCGGGAGGCCGTCGAACTCGCCACCTTGGAATGGGTAGCCTGGTTCAACAACCACCG 1849 Query 53470 ATTGCTGGAA 53479 |||||||| Sbjct 1850 CCTGCTGGAA 1859 Score = 136 bits (150), Expect = 1e-27 Identities = 744/1170 (64%), Gaps = 53/1170 (5%) Strand=Plus/Plus Query 49524 TTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGA 49583 |||||||||||||||| | ||||| | || ||||| | | | || || ||| Sbjct 733 TTCCCCCGAAGTCCGTGAACGGGCCGTCCGCATGGTGCAGAGCACCGTGGC-GAGTATCC 791 Query 49584 CTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAGACTCT 49643 ||| | ||||||||| || ||||||||||| ||||| |||||| || | | || || Sbjct 792 CTCGCTGTGGGCGGCCATCGAGTCCATTGCCCCGAAGATCGGCTGTTCGGCCAACACCCT 851 Query 49644 GCGTGTCTGGGTTCGCCAGCATGAGCGGGATACCGGGGGCGGTGATGGTGGGCTCACCAG 49703 || | |||||| ||| ||||||| ||| |||| | ||| | | || | Sbjct 852 GCATACCTGGGTACGCACGCATGAGATCGATGCCGGTCTGCGCSCTGGCGTG---ACGAC 908 Query 49704 CGCTGAACGTCAGCGTCTGAAAGAGCTGGAACGTGAAAATCGTGAACTGCGCCGCAGTAA 49763 || ||||| | || || | | ||||| || || || |||||| || Sbjct 909 CGACGAACGCGAACGCCTCGAGGCCCTGGAGCGCGAGGTCAAGGAGCTGCGCAAGGCCAA 968 Query 49764 CGATATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCT-CTGGA 49822 ||| || || | ||| ||| | ||| || |||||||| ||||||||| || || Sbjct 969 CGAGATACTGAAGCTGGCGAGCGCGTTTTTCGCCCAGGCGGAGCTCGACCGCCGGCTCGA 1028 Query 49823 AAAAATGA-TGCCACTGC-TGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGC 49880 ||| || ||| | | || || || || ||||||||| ||| | ||| Sbjct 1029 GTCC-TGACTG--ACTTCATCGACCGGCACCGGGATAGCCACGGGGTCGAGCCGATCTGC 1085 Query 49881 AGCGAACTGCATATTGCCCCGTCAACGTATTA---CCATTGTCAGCAACAGCG--ACATC 49935 | | ||| ||||||||||| ||||| |||| ||| ||||| || | Sbjct 1086 AAGGTCTTGCGGATTGCCCCGTCCGGGTATTGGCGCCATGCGGCGCAGCAGCGCGACCCC 1145 Query 49936 ATCCGGATAAACGCAGTGCCCGTGCGCAGCACGATGACTGGCTGAAGAAAGAGATACAGC 49995 || | | ||| ||||| |||| ||||| |||| | ||| || |||| Sbjct 1146 CGCCTGCTTCCCGCG-----CGTGCCCAGCGCGATGCGGTTCTGATGCCAGAAATTCAGC 1200 Query 49996 GCGTATACGATGAAAATCACCAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTAC 50055 | || | | | || ||||| || || | || |||||||| | |||| | Sbjct 1201 GGGTCTGGCACGCCAACATGCAGGTGTATGGCGCCGACAAGGTCTGGCGCCCGTTGAACC 1260 Query 50056 GGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATG--GCAGTTATGGGACT 50113 | ||||||||| || ||| | ||||| || | || || ||| || ||| ||| || Sbjct 1261 GCGAAGGTATCCAGGTCGCCCGTTGCACGGTCGAGCGCCTGATGAAGCGGTT--GGGGCT 1318 Query 50114 TGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCACTACCGTCAGCCGGA--AAGCCGT---- 50167 |||||||| | || || || ||| ||||| || || ||| || | ||||| Sbjct 1319 GGCCGGTGTGCGGCGTGGCAAGGTGGTGCGCACCACGGT--GCCCGACCACGCCGTCCCG 1376 Query 50168 TGCCGCATGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGT 50227 |||| || || || || ||| | || ||| || || ||||| | ||| ||||||| Sbjct 1377 TGCCCGCTG-GATCGGGTCAACTGGCAATTCAAGGTGGATCGTCCCAATCAGCTGTGGGT 1435 Query 50228 GGCTGATTTTACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGA 50287 | | || || |||| || || |||||||||| | |||||||| ||| | ||||| Sbjct 1436 GTCGGACTTCACCTACGTCTCGACCTGGCAGGGCTGGTTGTATGTGGCCTTCGTGATTGA 1495 Query 50288 TGTGTTCGCCGGATACATCGTGGGATGGCAGGTC--TCATCATCCATG-GAAACAACATT 50344 ||||| ||| | ||| ||||| |||| |||| |||| || ||| | | | || || Sbjct 1496 CGTGTTTGCCCGGCGCATTGTGGGCTGGCGGGTCAGTCAT--TCGATGCGGACCGAC-TT 1552 Query 50345 CGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCGTCCGGCAC--------- 50395 ||| ||||| |||||||||||||| ||| ||||| | ||| |||| Sbjct 1553 CGTCCTGGACGCACTGGAGCAGGCCCTGTACGCCCGGCAACCGGAACGCACCGATGCCCT 1612 Query 50396 AATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAA 50455 | || ||||| || ||| || ||||| || || | ||| | |||| || Sbjct 1613 GGTTCACCACAGCGACCGAGGCTCGCAGTACGTCTCCATCCGCTATGCCGAGCGCCTGGC 1672 Query 50456 GGAAGCCGGATTACTGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGGC 50515 || ||||| | | | || || || ||||||| ||||||||||| |||| Sbjct 1673 CGAGGCCGGGATCGAGCCCTCCGTCGGAAGCCGTGGCGACAGCTATGACAACGCCCTGGC 1732 Query 50516 TGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAG----CTGGAAAA 50571 || | |||||| || | ||||| | ||| || ||||| ||| |||||| | Sbjct 1733 CGAAACCATCAACGGCTTGTACAAGACCGAGCCGATCCACCG-CCGAGCACCCTGGAAGA 1791 Query 50572 ACCGGACAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACGAT 50631 |||| | || ||||| ||||| | ||||| | ||||| ||||| | || Sbjct 1792 GCCGGGAGGCCGTCGAACTCGCCACCTTGGAATGGGTAGCCTGGTTCAACAACCACCGCC 1851 Query 50632 TGCTGGAAAGGCTGGGCCATATTCCTCCGG 50661 |||||||| | ||| || | ||||||| Sbjct 1852 TGCTGGAATCCATCGGCTATGTCCCTCCGG 1881 >seq2157 Length=2836 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 49524 TTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGA 49583 |||||||||||||||| | || || || || ||||| | ||| | | || ||| Sbjct 2087 TTCCCCCGAAGTCCGTGAACGTGCCATCCGCATGGTGCAGGAGCACCGTGGCGAGTATCC 2146 Query 49584 CTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAGACTCT 49643 ||| | ||||||||| || ||||||||||| ||||| |||||| || | | || || Sbjct 2147 CTCGCTGTGGGCGGCCATCGAGTCCATTGCCCCGAAGATCGGCTGTTCGGCCAACACCCT 2206 Query 49644 GCGTGTCTGGGTTCGCCAGCATGAGCGGGATACCGG 49679 || | |||||| ||| ||||||| ||| |||| Sbjct 2207 GCATACCTGGGTACGCACGCATGAGATCGATGCCGG 2242 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 52364 TTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGA 52423 |||||||||||||||| | || || || || ||||| | ||| | | || ||| Sbjct 2087 TTCCCCCGAAGTCCGTGAACGTGCCATCCGCATGGTGCAGGAGCACCGTGGCGAGTATCC 2146 Query 52424 CTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAGACTCT 52483 ||| | ||||||||| || ||||||||||| ||||| |||||| || | | || || Sbjct 2147 CTCGCTGTGGGCGGCCATCGAGTCCATTGCCCCGAAGATCGGCTGTTCGGCCAACACCCT 2206 Query 52484 GCGTGTCTGGGTTCGCCAGCATGAGCGGGATACCGG 52519 || | |||||| ||| ||||||| ||| |||| Sbjct 2207 GCATACCTGGGTACGCACGCATGAGATCGATGCCGG 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185241889191448