Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq4425 86.0 7e-12 >seq4425 Length=1741 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/288 (66%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 6904 ATCGTATATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTC 6963 || ||| |||||||| ||| || | ||| || || || ||||| || ||| | Sbjct 1506 ATTGTAAATCTTGCCTGAAAAGTTGACCTTGGCGCCATGGGTCAGATGTCCACCGTGCGC 1447 Query 6964 CAAGGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTT 7023 || ||| | || |||| ||| ||||||||||| | || ||| || || || Sbjct 1446 CAGACTCATGCCCAGCACCGTATCGCCCGGCTTCAGCAAAGCCATGTACACGGCGGCATT 1387 Query 7024 TGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGC 7083 || || ||||||||| | || || || || || ||| | |||||| ||| || Sbjct 1386 GGCCTGCGAACCGGAAWGCGGCTGGACATTGGCATAATCAGCCCCGAACAGTCGTTTCGC 1327 Query 7084 ACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTT 7143 ||||| || ||||| |||| | ||| | | ||||||| || || || ||||| Sbjct 1326 GCGCTCGATGGCCAGTGTCTCCACAATGTCGACGTACTCGCAGCCTCCGTAGTAGCGTTT 1267 Query 7144 GCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||||||||| || | || || |||||||| | | | |||||||| Sbjct 1266 GCCCGGATACCCTYCCGCGTATTTGTTGGTCAGCACGGTTCCCTGTGC 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555323720618520