Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq2106 176 1e-39 >seq2106 Length=2500 Score = 176 bits (194), Expect = 1e-39 Identities = 352/512 (69%), Gaps = 19/512 (4%) Strand=Plus/Plus Query 17095 AGGCCGCCATTGAGTACCTGGAGCGCAAGGGGTTCGCCATTACCTGGAACTGGCACGA-- 17152 ||||||| || | ||||| ||| |||||| | | |||||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 17153 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGTCACGCCTGGATG 17211 || || ||| ||| || || || || | || | || ||| || | || ||| | | Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 17212 TGCTCCAGGACATCCGCGACGCCCTGGTCGATAACCTGGAACGTGGCGGAACGCTGCGCG 17271 || | |||||||| || | ||||| | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 17272 ACTTCCAGCGCAACCTGCGGCCGATCCTGGAGGCCAAAGGCTGGTGGGGGCGTCAGATAG 17331 ||||||| ||| || ||| | ||| | ||||| ||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 17332 TGGTTGCGCCGGACGGCGGG---GCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGG 17388 | |||| ||| || |||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGA--CGG-CGCCGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGG 2000 Query 17389 AAACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGCCGCCGCAT 17448 || ||||||| ||| ||| |||| || |||| |||||| |||| | || || Sbjct 2001 CTACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAAT 2058 Query 17449 A--CGAGGCCAGGGAAACCCACCCCTACTGGATGTATGTGGCGGTCATGGACAGCGTCAC 17506 ||| |||| ||| | ||||||||| ||| || || ||||| ||||| || ||| Sbjct 2059 GGCCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCAC 2118 Query 17507 TCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCA 17566 ||||||||||| ||| | | ||| ||||||||| ||||| || |||||| | Sbjct 2119 CCGGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-A 2177 Query 17567 GCAC-ATCATGCCGCCGAATGGCTACAACTGC 17597 ||| ||| |||||| ||||||| ||||||| Sbjct 2178 ACACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120225480249262