Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq89 233 2e-56 >seq89 Length=9661 Score = 233 bits (258), Expect = 2e-56 Identities = 601/903 (67%), Gaps = 27/903 (3%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACA---GAC 12856 |||||||||| ||| || ||||||||| | || | || ||||| ||||||| ||| Sbjct 1731 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAC 1674 Query 12857 ATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATA 12916 |||||||| || ||||||||||||||| || ||||||||||||| ||| || || Sbjct 1673 ---TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATT 1617 Query 12917 TTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGT 12976 ||||| ||| |||||| ||||| ||| | | ||| ||| ||||| | | Sbjct 1616 AAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCT 1557 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||| ||||||||||| || || || || ||| | | |||||||| ||| Sbjct 1556 AATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATT 1497 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || | ||| | || ||| | ||| | |||||| ||||||||||| ||||| Sbjct 1496 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1437 Query 13097 ATGTCTCTTATTACGTTCTC---TAATGGAGGATTTGATAGATGCTTAAACATCATACAT 13153 || | | | || || || |||| | | | ||| | || | || | ||| Sbjct 1436 ATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAA---CTATAAATTAAACAG 1380 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||||| || || || ||||| ||||| |||| || || |||||||| ||| Sbjct 1379 TTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCA 1320 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 | | | ||||||||| |||||| || ||| ||| || ||| |||||| Sbjct 1319 TGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATT 1260 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||| || |||| |||| | ||||| || | | |||| || | |||| Sbjct 1259 CCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA---AGAATTTGTATCATTTATC 1203 Query 13334 CACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 || || ||||| |||||| || || | || | | |||||||| || || | ||| Sbjct 1202 CATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGT-ATATTTTCAATAGCATGAAA 1144 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 ||||| | |||| || ||| ||||||| |||| || ||||| ||||| |||| Sbjct 1143 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 1084 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC--TGATACC 13510 ||||| |||||||| | |||||||| ||| |||||| | | || || | || | Sbjct 1083 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1024 Query 13511 TGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 | ||||| ||||| || || || || ||||| || || || ||||| || || Sbjct 1023 T--ACTTC-TCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGC 967 Query 13570 aaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATC 13629 |||||| || | | || || ||||| | |||||| || | || ||| |||| Sbjct 966 AAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATC 907 Query 13630 TGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTT 13689 | ||||| | |||||||| | || ||| | |||||||| ||||| |||| || || Sbjct 906 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 847 Query 13690 ATA 13692 || Sbjct 846 GTA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430952528475174