Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq214 242 9e-59 seq5639 199 9e-46 seq89 129 1e-24 >seq214 Length=8422 Score = 242 bits (268), Expect = 9e-59 Identities = 190/227 (84%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | ||||||||||| || |||||||| ||||| |||||||||||| Sbjct 6471 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 6530 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||||| |||||| ||||||||||||| || ||||| |||||||| Sbjct 6531 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 6590 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| ||||| || ||||| |||||||| | |||||| |||||||| Sbjct 6591 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 6650 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| | |||||||||||| |||||||| Sbjct 6651 TCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 235 bits (260), Expect = 1e-56 Identities = 190/230 (83%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 6696 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6755 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 6756 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 6815 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | |||||| |||||| Sbjct 6816 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 6875 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | |||||||||||| |||||||| Sbjct 6876 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 221 bits (244), Expect = 3e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 6924 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 6983 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || ||||| |||||| Sbjct 6984 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 7043 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| |||||||| || || || ||||| |||||||| | |||||| |||||| Sbjct 7044 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 7103 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | |||||||||||| |||||||| Sbjct 7104 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 196 bits (216), Expect = 1e-44 Identities = 165/203 (81%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 7152 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 7211 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 7212 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 7271 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | ||||| || ||| Sbjct 7272 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 7331 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 7332 ACATCAAGAGTTATAGTTTTTCC 7354 >seq5639 Length=3794 Score = 199 bits (220), Expect = 9e-46 Identities = 172/213 (81%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || || ||||| ||||||||||||||||||| ||||| || ||||| Sbjct 841 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 900 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||||||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 901 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 960 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | || || ||||| || || || || || || || Sbjct 961 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1020 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||| || |||||||| Sbjct 1021 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1053 >seq89 Length=9661 Score = 129 bits (142), Expect = 1e-24 Identities = 351/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| | || | ||||| |||||||| | |||||| | ||| | || || || Sbjct 844 TACAAAAAAGCTGAAGCTTCATTTTGGACAGCTGAAGAAATTGATTTATCGAGCGATTTG 903 Query 268805 ATAGATTG-GAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTT 268863 | ||||| |||||||| || || | |||| | |||||| || || | || || Sbjct 904 AAAGATTTTGAAAAATTAAATGTCA-ATGAAAAACATTTTATAAAACATGTTTTAGCATT 962 Query 268864 TTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAG- 268921 |||||||| |||||||| || || |||||| | | ||| || || | ||||| Sbjct 963 TTTTGCAGCAAGTGATGGAATTGTATTAGAAAATTTGGCTAGTAAATTTTT---AAGAGA 1019 Query 268922 -GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 ||| | ||| |||||| | | ||||| || || |||||| | |||||||| || Sbjct 1020 AGTAGAAATTATTGAAGCAAAAAAATTTTATTCTTTTCAAATAGCTGTTGAAAATATACA 1079 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 ||| || | || ||| ||||||| |||| |||||| | ||| | || |||| || Sbjct 1080 TTCTGAAACATATAGTTTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAA 1139 Query 269041 ACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 ||||| | |||| || ||| | | | ||| ||| | ||||||| || Sbjct 1140 TTTATTTCATGCTATTGAAAATATACCAGCTATCAAAAATAAAGCATTATGGGCTGCTAA 1199 Query 269101 ATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 ||||||||| |||| ||| | |||||| | || ||| ||| ||||||||| Sbjct 1200 ATGGATAAATGATACAAATTCTTTTGCAGAAAGAATTGTAGCTAATGCATGTGTAGAAGG 1259 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 ||||| ||| || |||| || || |||||||| || |||| | || | Sbjct 1260 AATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTTTAA-AAAACAAAATAAATTAC 1318 Query 269221 A-GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 | || ||||| || ||| ||||| || || ||||| || |||||||| Sbjct 1319 ATGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGAGGGTTTACA 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151314503715396