Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq4235 221 3e-53 seq2106 165 2e-36 >seq4235 Length=1163 Score = 221 bits (244), Expect = 3e-53 Identities = 377/540 (70%), Gaps = 10/540 (2%) Strand=Plus/Plus Query 23228 CCGATCGGCACGACGCTCGCGCAGGCGCTGGCCGGGCGCGGGCCGGCGGGCACGATCAAC 23287 ||||||||||| ||| | ||||||||| | |||||||| || || ||| | |||||| Sbjct 1 CCGATCGGCACCACGGTGCAGCAGGCGCTAACGGGGCGCGGCCCCGCCGGCGCCATCAAC 60 Query 23288 TTCAACACGTCCAGC---GACCGCGTACGCCTCTGCTACCCGCACGTGAAGGTCTACGAC 23344 ||||| | |||| ||||| | |||| ||||| ||||| ||||||| |||||| Sbjct 61 TTCAAT---TACAGCTCGGACCGGCTGGGCCTGTGCTATCCGCATCTGAAGGTGTACGAC 117 Query 23345 ACCGCGACCAACGCGGAACGCCTGGAGCCGCTCTCATCGCGTGCGGCGGGCCTTCGCGCA 23404 | ||| || ||| ||| |||||||||| | || |||| |||||| ||| Sbjct 118 AGCGCCTCCGGCGCCGAAATCCTGGAGCCGATGTCGCCGCGCCTGGCGGGGAGGATCGC- 176 Query 23405 CGTGTC-GACCTGGACAAGGGCTACTGGTGGTCCAGCTCGAATCAGCAGCTCGTCGGCGT 23463 || | | |||| ||||||||| ||||||||| ||||| ||| || || || | Sbjct 177 CGCGACCGACCAGGACAAGGGTTACTGGTGGAGTGCGTCGAACCAGGAGATCAAGGGGAT 236 Query 23464 CACGGGCGTCGAGCGGCCGCTGTCGGCGATGATCGACGATCCGCAATCGGACGTGAACAT 23523 | ||| |||||| |||| || ||||||||||| |||||||| ||||| || | Sbjct 237 CGTCGGCCTCGAGCTGCCGTTGACGGCGATGATCAACGATCCGGCCTCGGAAACCAATCT 296 Query 23524 GCTCAACGAACAGGGCATCACGACCGTGTTCAGCTCGTACGGCTCGGGCCTGCGCCTGTG 23583 ||| ||||| ||||||| || ||||||| | ||| ||| ||||| | ||| || Sbjct 297 GCTGAACGAGGCCGGCATCATCACGGTGTTCAACGCGTTCGGATCGGGGATCCGCACCTG 356 Query 23584 GGGCAACCGCACGGCGGCATGGCCGACCGTGACGCACATGCGCAACTTCGAGAACGTGCG 23643 |||||||||| |||| || |||||| | ||||| |||||||||| ||| | || Sbjct 357 GGGCAACCGCTCGGCAGCCTGGCCGTCGAACACGCATCCGCGCAACTTCATCAACATCCG 416 Query 23644 CCGTACGGGCGACGTCATCAACGAATCGCTGCG-CTACTTCAGCCAGCAGTTCGTCGACG 23702 ||| || | |||||| ||| ||||| || || || | | | ||| ||| | || Sbjct 417 CCGCACCGCCGACGTGATCCACGAA-AGCATCGAGTATTCGATGCTGCAATTCCTGGATC 475 Query 23703 CGCCGATCGACCAAGGGCTGATCGACTCGCTCGTCGAGTCGGTGAACGGGTTCGGGCGCA 23762 ||||||| | | | ||||||||| | || |||| |||||| |||| ||||| Sbjct 476 AGCCGATCACCGATGCCCTGATCGACGCCATCACCGAGAGCGTGAACCTGTTCCTGCGCA 535 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 23972 AAATCAACCGGATCACGAACGCCAACGTGTATCTGAGCAACAATTCCATGCTCGGCAAGG 24031 |||||||| || |||| ||||||||||| || || | | ||| | |||||| || Sbjct 1033 AAATCAACAGGCTCACCAACGCCAACGTCTACCTCGACGGCGCATCCTTCCTCGGCCGGG 1092 Query 24032 CTGAGGAAATCAAGCTGCCGGACATCCAGGCGATCATGGCCGAGCACAA-GGCGCTCGGC 24090 | ||||| || |||||||||||||| || | |||| |||||||| |||||| || Sbjct 1093 CCGAGGAGGTCGAGCTGCCGGACATCAAGCACAAGATGGAGGAGCACAATGGCGCTGGGG 1152 Query 24091 ATGATCGGCA 24100 ||| |||||| Sbjct 1153 ATGGTCGGCA 1162 >seq2106 Length=2500 Score = 165 bits (182), Expect = 2e-36 Identities = 347/502 (69%), Gaps = 22/502 (4%) Strand=Plus/Plus Query 17338 GCGATCGAGTACTTGC-GCAGCAAGGGCTACGAGATCACCTGGGATTGGGAGGAGCTTTG 17396 ||||||| ||| | | ||| |||||||||| || | |||||| | ||| ||||| | Sbjct 1713 GCGATCGCCTACCTCCAGCA-CAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGATGCT 1771 Query 17397 GCAGGACGCCCAGGCGAAGGCATTTACGGTTGCCAAGGTCACGCGCCTGGACATCCTGCA 17456 | | || ||||| || ||| ||||| |||| ||| |||| ||| || | |||| Sbjct 1772 GGACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGGTGCA 1830 Query 17457 GGACATTCGCAACGCGGTCGAAACCGCAATCAGCGAAGGCAAGACGTTGCGATGGTTCAC 17516 ||||||||| || || | || ||| || || | ||| | ||| | | | | | | Sbjct 1831 GGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCT-CAAGGACTTCC 1889 Query 17517 GAAAGAGCT-GACGCCCGTACTGCAATCCAAGGGCTGGTGGGGAAAGCAGGAGCA-CGTC 17574 ||| | || || |||| |||||| |||||||||||||||| || ||| | || ||| Sbjct 1890 AAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAG-ATCATCGTT 1948 Query 17575 GACCAGGATACCGGCGAAGTCAACCAGGTT---CAGCTCGGCAGCCCGTGGCGCCTGCAG 17631 ||| | |||| || | | |||| | ||| |||||||| ||||| ||| Sbjct 1949 GACGGCG---CCGG-GAWTSC--CGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCT 2002 Query 17632 ACCATCTACCGAACGAACCTGCAGACGGCCTACATGGCGGGCCGCTACGCCGAGCAAATG 17691 || |||||||| ||||||||||| | |||| |||||||| || || || ||||| Sbjct 2003 ACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGG--CGAATTACCAAG-AAATG 2059 Query 17692 G-CGAA--CGTCGACGATCGGCCGTACTGGATGTACGTGGCGATCCTCGACAGCCGCACG 17748 | |||| | ||| | || || ||| ||||| ||| | || ||| ||||||| Sbjct 2060 GCCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACC 2119 Query 17749 CGCCCGAGCCATCGGGCAATGAACGGCAAGGTGTTCCGTTACGACGATCCGTTCTGGCAG 17808 || || ||||| ||||| ||||||||| |||||||| | |||||||| ||||| | Sbjct 2120 CGGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGGAAC 2179 Query 17809 TCGTTCTACCCGCCGAACGGCT 17830 || ||| ||||| || |||| Sbjct 2180 ACGATCTGGCCGCCCAATGGCT 2201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117464066748740