Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq903 224 1e-53 seq362 214 2e-50 seq2168 89.7 6e-13 >seq903 Length=7548 Score = 224 bits (248), Expect = 1e-53 Identities = 479/711 (67%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | ||||| |||||| | || || Sbjct 6227 AATTTTAATTTTGAAGAATTAGGTATAGGAGCGTTAGATGATGAATTTAAAATAATATTT 6168 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 || || ||||||| |||| | ||| | | |||||||| ||||||| |||| Sbjct 6167 CGAAGAACATTTGCAAGTAGAATATATCCAAATTATATAATAAAGCAATTAGGAATTAAA 6108 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| |||| || || ||||| |||| ||||||||| |||||||| |||| |||||| Sbjct 6107 CATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACTCTAATAGCTCGA 6048 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| | || | || || | | || || ||||||| ||||||| || ||| ||| Sbjct 6047 CAAATTGGTAAAACATTGAATGCTAGAGAACC--TAAAATTATTAATGGACCGGAAATAT 5990 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || |||||||||||| | ||||||| ||| || | || || ||| | || || ||| Sbjct 5989 TAAATAAATATGTAGGTCAATCAGAAGAAAATATTCGTAATTTATTTAAAGATGCAGAAT 5930 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 |||| | || || | || | | ||||||| ||||| | || ||||| |||| Sbjct 5929 TAGAATATAAACAATCTGGAGAAAATTCATTATTACATATTATTATATTAGATGAAATAG 5870 Query 164750 ATGCTCTTTG----CAAAAA--ACGTGGTGATAATATT---------ATTCATGAT-GCA 164793 |||| |||| |||| | |||||| || | | ||||| ||| Sbjct 5869 ATGCAATTTGTCGACAAAGAGGTAGTGGTGCATCTACTGGGTCAGGAGTAAATGATAGCA 5810 Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 | |||||||| || | || ||||||||||| || | ||||||||||| ||| | Sbjct 5809 -TAGTTAATCAATTATTATCAAAAATAGATGGAGTTAACAGTTTAAATAATATATTATTA 5751 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | || ||||| || || ||| |||| ||||| || |||||| |||| |||||||| Sbjct 5750 ATCGGAATGACAAATAGAATAGATCTAATAGATGAAGCATTATTAAGACCAGGTCGATTT 5691 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||||| | || |||||| |||||| | |||||||| | | ||||| ||||| || Sbjct 5690 GAATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATCCAAATATTAAATATT 5631 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || |||| | | ||| ||| | | |||||| || || | || || Sbjct 5630 CATACAAAAAATATGAGACAAAATAATAAGTTAAGTGCAGATGTAAATATAGAAGAATTA 5571 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| ||| ||||| | ||||| ||| | || || ||||||||| Sbjct 5570 GCTGAAAGAACCCCAAATTTTTCAGGTGCAGAAATTGAAGGGTTAGTAAGA 5520 >seq362 Length=22319 Score = 214 bits (236), Expect = 2e-50 Identities = 414/598 (69%), Gaps = 20/598 (3%) Strand=Plus/Minus Query 6816 TTTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 ||||| |||||| | |||||| ||||| |||||||| || | ||| ||||||| Sbjct 17693 TTTTA-AGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATT 17635 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 || |||||| | | | |||| || || | |||||| |||| | ||||||||| | Sbjct 17634 CAGCTGGTTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAA 17575 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAA 6993 ||||| || || |||| ||| | ||| ||||||||||| ||| ||| ||||| Sbjct 17574 TGTTAAATGGAACTCCTAGTCCTAAATCACAAGATCTTTGATA-CATAATACATGATAAT 17516 Query 6994 ATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 | || | | ||||||||||||| || | ||||||||||||||| | | |||| Sbjct 17515 TTTCCATCAAAAACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCT 17456 Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTATCATTTGGATTTGTTTTTA 7111 | ||| | |||||| ||| ||| ||| || |||||| ||| | | | |||||| Sbjct 17455 AAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA-CATGTAGGATCATTTTTA 17399 Query 7112 ATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAA 7170 ||| || ||||| ||| || |||||| | ||| | | ||| ||||||| ||| | Sbjct 17398 ATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATA 17339 Query 7171 TTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 | | |||| | ||| ||||||||||||||||| || |||||||||||||| | |||| Sbjct 17338 TCTGTATATTCAGCACCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTA 17279 Query 7231 TCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCC 7288 |||| | ||| || | | ||| | || |||| | ||| ||||| ||| |||| Sbjct 17278 ACTTCTCTATGAAATAATTTTCTATT--ATCTAAAAATTCTCTTGTTCCATTAGCTTCCC 17221 Query 7289 AAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTGTAGATCCTTTAAGGAACC 7345 | || |||| ||||| | | || |||| |||||| |||| | | |||| Sbjct 17220 ATATTCTTACATTTTTTTCTAACAATGTATTT---CCATTTGTTTCTCCTCTTATAAACC 17164 Query 7346 ATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 |||| | |||||| | || || ||| ||| | | ||||||| || ||||| || || Sbjct 17163 ATAATAATTCTTCAATAATACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAA 17106 >seq2168 Length=13317 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| | ||||| | ||| ||| |||| || ||||| ||||| | Sbjct 8617 TAAAGTAAAAGTTCGATCTGTTCGAATTCCTCAAATTGGAGATAAATTTGCAAGTAGACA 8676 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || ||||||||| ||| |||||| | ||| | ||||||||||| ||||| || Sbjct 8677 TGGTCAAAAAGGTACAATTGGTATAACATATAGAATGGAAGATATGCCATTTACATCTGA 8736 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| || ||||||||| ||||| ||| ||||| Sbjct 8737 TGGTACATTTCCTGATATTATTATGAATCCACATGCTGTTCCATCTCGTATGAC 8790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595829640949200