Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq214 138 1e-27 seq5639 123 2e-23 >seq214 Length=8422 Score = 138 bits (152), Expect = 1e-27 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || |||||||| |||| || || || || ||||| || Sbjct 6674 TAATGTTTTTACAAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGA 6733 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||||| |||||||| | ||| || | ||||| || || Sbjct 6734 TTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCA 6791 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| ||||| ||||| || |||||||| || | |||||| || || || Sbjct 6792 AAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACA 6851 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||| || | | || || |||| || |||||||||||||| | ||||| Sbjct 6852 TTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTT 6911 Query 94994 ACAAAGATCTGCAT 95007 ||||| |||||||| Sbjct 6912 ACAAAAATCTGCAT 6925 Score = 129 bits (142), Expect = 5e-25 Identities = 182/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || |||||||| |||| || || || || ||||| || Sbjct 6902 TAATGTTTTTACAAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGA 6961 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||||| |||||||| | ||| || | ||||| || || Sbjct 6962 TTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCA 7019 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| || || |||||||| || ||||| || | ||||| || || || Sbjct 7020 AAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACA 7079 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||| || | | || || |||| || |||||||||||||| | ||||| Sbjct 7080 TTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTT 7139 Query 94994 ACAAAGATCTGCAT 95007 ||||| |||||||| Sbjct 7140 ACAAAAATCTGCAT 7153 Score = 116 bits (128), Expect = 3e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || |||||||| |||| || || || || ||||| || Sbjct 7130 TAATGTTTTTACAAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGA 7189 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||||| |||||||| | ||| || | ||||| || || Sbjct 7190 TTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCA 7247 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| ||||| |||||||| |||||||| || | |||||| || || || Sbjct 7248 AAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACA 7307 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | ||| |||| | || || |||| || || |||||||| Sbjct 7308 TTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 7354 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || | || || || ||||| ||||| | |||||| || Sbjct 6471 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAG-- 6528 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||||||| | ||| || | ||||| || |||| ||||||||||| || || |||| Sbjct 6529 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAG 6588 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | |||||| || || || | | ||| || | | || | Sbjct 6589 GAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 6648 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || || |||||||| | ||||| ||||| |||||||| Sbjct 6649 CATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 >seq5639 Length=3794 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || || || || || ||||| | ||||| || | | || || || ||| || Sbjct 842 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAAT-GTTCTGCCATCTTC 900 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||||||| |||| ||||||||||| ||||| |||||||| |||||||| || | Sbjct 901 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 960 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| || || || | | |||||||| | || || |||| ||||| ||||| Sbjct 961 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1020 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||| ||||| Sbjct 1021 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259332099320