Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1326 125 1e-23 >seq1326 Length=11127 Score = 125 bits (138), Expect = 1e-23 Identities = 498/770 (65%), Gaps = 23/770 (3%) Strand=Plus/Plus Query 193437 GCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCT 193496 ||||||||| || ||||| || |||||||| || ||| | ||| || ||||| | Sbjct 3666 GCATTAATATTTGGTATAACAGGACAGGATGGGTCATATTTAAGCGAATTGCTTTTAGAT 3725 Query 193497 AAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAATACTCATAGAATT 193556 || ||||||||||||||||| || | |||||| || | | ||||| | ||||| Sbjct 3726 AAAGGATATGAAGTTCATGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 3785 Query 193557 GATCATATCTATGAGAAGATCACTCTTCATTATGGAGATCTAACTGATCCT-GTAA-ATG 193614 |||||||| | ||| || | | | | |||||||| ||| || |||| | |||| || Sbjct 3786 GATCATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATA 3845 Query 193615 TTATGGGTGTCATTAGGGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTC 193674 || | | | || | | | |||| ||| || |||||| | | ||| ||||||| Sbjct 3846 TTTT--CTTTAATAACTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTC 3903 Query 193675 ATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTC-TAATGTTGATGCTTTAGGAACT 193733 |||| ||||| ||||| | || || ||||| | ||||| | ||| |||| || Sbjct 3904 ATGTAAAAGTAAGTTTTGAATTACCTGAATATACAGCACAATGTACA-GCTATAGGTACA 3962 Query 193734 CTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAG 193793 || |||||| | ||| || | || || || || || | | ||| | Sbjct 3963 CTAAGAATATTAGAATCAAT---TAAATTATCAAAAATTAATAATATCAAATTTTATAAT 4019 Query 193794 GCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCA----GAAACCAC 193849 || || || ||| | |||||| | | | | | || | ||| |||| || Sbjct 4020 GCTTCAACATCAGAATTATATGGTAATAATATTCAAAGT-CAATGTCATAATGAAAATAC 4078 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 ||||||| |||| || ||||||||| ||||||| || ||| | ||| || | || Sbjct 4079 ACCATTTAGTCCAGTTTCACCTTATGGTATAGCAAAATTATATAGCCATTATATAACAAA 4138 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCT---AGTT-CTGGTATTCTCTTCAATCACG 193965 |||||| | || ||||| || | | | ||| |||||| | || ||||| | Sbjct 4139 AAATTATAGAGAAGCATAT-AAT---ATGTTTTGTGTTAATGGTATATTATTTAATCATG 4194 Query 193966 AATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGA 194025 | ||||||| | ||||| |||||||| || || |||||| |||| || | || | Sbjct 4195 AGAGTCCAAGACGTGGTGAAACATTTGTTACAAAAAAAATTACAAAAGGGATAGCAAAAA 4254 Query 194026 TCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085 | | | | | || | || || | || ||| || || | || ||||||| Sbjct 4255 TATTTAAAAAAATTCAAACTGTTATTACATTAGGAAATATTGATACATTTAGAGATTGGG 4314 Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145 | || ||||| |||||||| | || || | |||||||| ||||| | ||| | Sbjct 4315 GTCATGCAAAAGATTATGTATATGCAATATATTTAATGTTACAACAAAAAACACCTAGCG 4374 Query 194146 ATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG-ACTTTGTGAA 194194 ||| ||| ||| | | | |||| |||| ||| ||| | |||||||| Sbjct 4375 ATTTTGTTATTTGTTCTAATCAACATCATTCAGTTCGAGAATTTTGTGAA 4424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807497792919720