Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq89 268 1e-66 >seq89 Length=9661 Score = 268 bits (296), Expect = 1e-66 Identities = 627/939 (67%), Gaps = 21/939 (2%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| || ||| |||||| | | | ||||||| ||||| |||| Sbjct 1739 ATATTTTCTTAAAAATCAGTATTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1683 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || ||||||||||| |||||||||||| || |||||||| ||||||| || Sbjct 1682 ACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1623 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| ||| || || |||| ||| | ||| | |||| ||| || | Sbjct 1622 GATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAA 1563 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||||||| || |||||||| ||||||||| |||| | ||||||| Sbjct 1562 CATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATT 1503 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1502 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1443 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACA----ATAATTGTTTAAACAT 21471 || |||||| || | | || | || || || | |||| || | || Sbjct 1442 TTAACTATATT--TTGAACAACATTTTCT--GGTAATTTATTTTCTAATAAACTATAAAT 1387 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||| ||||||| ||| ||||| ||||||||||| |||||||||||| |||||| Sbjct 1386 TAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGT 1327 Query 21532 TAAACC-GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAA 21589 |||||| | ||| || | | ||||| |||||||| |||| | |||| | ||| | Sbjct 1326 TAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTG-CACAAAAACTTCCACTA 1269 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || || || || || ||| || || | || ||| | | ||| | | || Sbjct 1268 AATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA---AGAATTTGTA 1212 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 || ||||||||| | |||||| ||| || | ||| ||| || | |||||| Sbjct 1211 TCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATA 1152 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || | || | || | |||| | | |||| | || |||| Sbjct 1151 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 1092 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || ||||||||||||||||||| | ||||| ||||| ||||| | |||| || Sbjct 1091 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1032 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | || || || ||||| |||||| ||||| ||| ||||||||||| Sbjct 1031 ATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTT 972 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || ||||||||||| || | || ||||||||||| | ||| || | ||||||||| Sbjct 971 GCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCA 912 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 ||||| ||||| | |||||||| | |||||||| ||||||||| ||| ||| Sbjct 911 AAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCT 852 Query 22010 TTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||||| || | | |||| | ||| ||| || || ||| Sbjct 851 TTTTTGTAAAAATTCCAAACTTCAGGATACATAATAGGA 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531862988501880